Remove hardcoded paths in RNA-seq Gen #199
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Add boundary column
Allow writing zFPKM graphs to a specific location
Write zFPKM Graphs
This moves all components of rnaseq.py into rnaseq_gen.py
Reduce complexity of building matrix results
This is functionally equivalent to the _read_counts_matrix function from rnaseq.py
Signed-off-by: Josh Loecker <[email protected]>
This requires troppo and cobamp but does not yet set their version Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
This also sets the downstream sovler in cobamp Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Set Troppo Source
…ral-sh/ruff-action-2 chore(deps): bump astral-sh/ruff-action from 1 to 2
…ral-sh/setup-uv-4 chore(deps): bump astral-sh/setup-uv from 3 to 4
Signed-off-by: Josh Loecker <[email protected]>
hotfix: allow setting solvers through troppo; update actions
# Conflicts: # main/como/rnaseq.py
# Conflicts: # pyproject.toml
# Conflicts: # main/como/rnaseq_gen.py
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.