Adding Vertebra Labeling Phase after both segmentation steps #125
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: tests | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest] | |
| python-version: ["3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| - name: Configure python | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install poetry | |
| python -m pip install flake8 pytest | |
| - name: Install dependancies | |
| run: | | |
| python -m poetry install | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest and create coverage report | |
| run: | | |
| python -m poetry run coverage run --source=spineps -m pytest | |
| python -m poetry run coverage xml | |
| - name: Upload coverage results to Codecov (Only on merge to main) | |
| # Only upload to Codecov after a merge to the main branch | |
| if: github.ref == 'refs/heads/main' && github.event_name == 'push' | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} |