Merge pull request #108 from HobnobMancer/fix_tax_invalid_ids

Fix tax invalid ids
HobnobMancer · Jan 12, 2023 · 0672fab · 0672fab
2 parents d7f773a + 82865ea
commit 0672fab
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Showing 3 changed files with 8 additions and 3 deletions.
diff --git a/cazy_webscraper/__init__.py b/cazy_webscraper/__init__.py
@@ -54,7 +54,7 @@
 from cazy_webscraper.sql import sql_orm
 
 
-__version__ = "2.2.5"
+__version__ = "2.2.6"
 
 
 VERSION_INFO = f"cazy_webscraper version: {__version__}"

diff --git a/cazy_webscraper/ncbi/taxonomy/multiple_taxa.py b/cazy_webscraper/ncbi/taxonomy/multiple_taxa.py
@@ -132,7 +132,12 @@ def replace_multiple_tax(cazy_data, genbank_accessions, replaced_taxa_logger, ar
 
         else:
             # first time replace_multiple_tax was called
-            cazy_data, success = replace_multiple_tax_with_invalid_ids(cazy_data, args)
+            cazy_data, success = replace_multiple_tax_with_invalid_ids(
+                cazy_data,
+                genbank_accessions,
+                replaced_taxa_logger,
+                args,
+            )
 
     if success is False:
         logger.error(

diff --git a/setup.py b/setup.py
@@ -53,7 +53,7 @@
 
 setuptools.setup(
     name="cazy_webscraper",
-    version="2.2.5",
+    version="2.2.6",
     # Metadata
     author="Emma E. M. Hobbs",
     author_email="[email protected]",