This is the README file for the OxNet Science Programme seminar delivered by Prof. Andy Baldwin about protein folding. If you are on the OxNet programme and have any questions about the data or code, please talk to the OxNet support team or get in touch with Holly Jones.
You are provided with a Jupyter notebook in https://github.com/HollyRoach/OxNet-Protein-Folding/blob/main/OxNetDiffusion.ipynb. This notebook provides the Python code necessary to load the data and manipulate it in various ways.
For the homework you should work through the provided Jupyter notebook, reading each entry and doing your best to understand each cell of Python code. Feel free to edit the code, or run additional tests, as you wish. There are several challenges and tasks set out in this notebook. However, you will likely find it easier to write your own code in a new notebook which you can then later submit.
To get started with the homework, follow the steps below:
- Log on to SageMaker Studio Lab, start the runtime, and open your project.
- Open the “Git” mention and select “Clone Git Repository”
- This will pop up a dialogue box. In the empty field (”Git repository URL (.git):”) paste the following: https://github.com/HollyRoach/OxNet-Protein-Folding.git
- Uncheck the box after “Search for environment.yml and build Conda environment.” (but leave the other one checked).
- Click the blue Clone button
This will copy the Python activity files into your project and open this README file.