Functional changes for graphical hypothesis testing and clustering range estimation#2

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t-pollington wants to merge 74 commits intoHopkinsIDD:masterfrom t-pollington:master

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Commits on Feb 8, 2020

Commits on Feb 12, 2020

Commits on Mar 4, 2020

Add coxed import
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Commits on Mar 11, 2020

Update refs
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Commits on Mar 12, 2020

Commits on Mar 17, 2020

Replace quantile() with coxed::bca where possible. Removed previously deprecated code.
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Fix test() and test_file() giving different results by removing context() as advised by the help file of the latter.
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Delete context() on first line as test_that says "We no longer recommend the use of context() and instead encourage you to delete it, allowing the context to be autogenerated from the file name."…
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deprecated is_true replacement
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Fix expect_true bug
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Incorporate tau class
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Fix bugs assoc with new tau class.
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Updates
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plot.tau() method added
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Correction to previous commit. It was print.tau that was added, not plot.tau!
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U-turn: print.tau not required as print() sufficient
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Commits on Mar 19, 2020

Commits on Mar 23, 2020

Commits on Jul 5, 2021

Typo
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Commits on Jul 21, 2021