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Initial python linting #6

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Initial python linting

Initial python linting #6

Workflow file for this run

.github/workflows/gempyor-ci.yml at d23ccc4
name: gempyor-ci
on:
workflow_dispatch:
push:
paths:
- examples/**/*
- flepimop/gempyor_pkg/**/*
branches:
- main
- dev
pull_request:
paths:
- examples/**/*
- flepimop/gempyor_pkg/**/*
branches:
- main
- dev
jobs:
unit-tests:
runs-on: ubuntu-latest
container:
image: hopkinsidd/flepimop:latest-dev
options: --user root
steps:
- name: Checkout
uses: actions/checkout@v4
with:
lfs: true
- name: Install the gempyor package
run: |
source /var/python/3.10/virtualenv/bin/activate
python -m pip install --upgrade pip
python -m pip install "flepimop/gempyor_pkg[test]"
shell: bash
- name: Run gempyor tests
run: |
source /var/python/3.10/virtualenv/bin/activate
cd flepimop/gempyor_pkg
pytest --exitfirst
shell: bash
- name: Run gempyor-cli integration tests from examples
run: |
source /var/python/3.10/virtualenv/bin/activate
cd examples
pytest --exitfirst
shell: bash