fix obs_subpop -> "subpop"

HopkinsIDD · Oct 9, 2023 · f1b1088 · f1b1088
1 parent 4de7873
commit f1b1088
Showing 1 changed file with 1 addition and 3 deletions.
diff --git a/flepimop/main_scripts/inference_slot.R b/flepimop/main_scripts/inference_slot.R
@@ -117,7 +117,7 @@ suppressMessages(
         subpop_len = opt$subpop_len
     )
 )
-obs_subpop <- config$subpop_setup$subpop
+obs_subpop <- "subpop"
 
 ##Load simulations per slot from config if not defined on command line
 ##command options take precedence
@@ -152,7 +152,6 @@ if (all(seir_modifiers_scenarios == "all")){
     quit("yes", status=1)
 }
 
-
 ##Creat heirarchical stats object if specified
 hierarchical_stats <- list()
 if ("hierarchical_stats_geo"%in%names(config$inference)) {
@@ -200,7 +199,6 @@ if (gt_end_date > lubridate::ymd(config$end_date)) {
     gt_end_date <- lubridate::ymd(config$end_date)
 }
 
-
 # if we want to run inference, do the following:
 
 if (config$inference$do_inference){