This repository presents the supplementary texts for the manuscript "Achieving coordinated national immunity and cholera elimination in Haiti through vaccination".
Main_Supplement.pdf: Primary supplement document that describes the modeling exercise and summarizes results across teams.Model-1_Supplement.pdf: Supplementary methods and results from Model-1 from the Johns Hopkins Bloomberg School of Public Health.Model-2_Supplement.pdf: Supplementary methods and results from Model-2 from the Fred Hutchinson Cancer Research Center and University of Florida.Model-3_Supplement.pdf: Supplementary methods and results from Model-3 from Ecole Polytechnique Fédérale de Lausanne.Model-4 Supplement.pdf: Supplementary methods and results from Model-4 from the Institute for Disease Modeling.
This folder contains the following team model outputs at two elimination thresholds (thresh1 = less than 1 infection per 10000 population, or thresh2 = less than 1 case with no resurgence over a consecutive 52 week period):
elimdate_...: weekdate of elimination for each model simulation and vaccine deployment scenariopr_elim_...: probability of elimination and cumulative number of infections for a given vaccine deployment scenariots_...: time series projections of true cholera infections and observed cholera cases for each vaccine deployment scenariotte_...: time to elimination summary statistics for each vaccine deployment scenario
The central supplement information is located at DOI: 10.5281/zenodo.3361801.
All team-specific model inputs and codes are available at the following DOI links:
- Model-1, Johns Hopkins Bloomberg School of Public Health: 10.5281/zenodo.3360991
- Model-2, Fred Hutchinson Cancer Research Center and University of Florida: 10.5281/zenodo.3360857
- Model-3, École Polytechnique Fédérale de Lausanne: 10.5281/zenodo.3360723
- Model-4, Institute for Disease Modeling: 10.5281/zenodo.3360885