SCReadCounts-1.2.0
·
271 commits
to master
since this release
- Better memory management, batch SNVs if necessary
- Can now count UMIs in a read-group (cell-barcode) not just number of reads
- Explicit options for Cell- and UMI-Barcode label logic for extracting tags
- Predefined cell-barcode and UMI-barcode logic for CellRanger in addition to UMI-tools and STARsolo.
- Directional counts, VAF values (forward, reverse) if desired