Added script to copy out BBEA tool to own repository for deployment

build.js

@@ -75,12 +75,15 @@ const buildIndex = {
     ],
     // Full source for environments with strong focus on biodiversity info
     newSource: [
-        "src/client/css/mapbox-gl-draw.css",
+        "node_modules/@mapbox/mapbox-gl-draw/dist/mapbox-gl-draw.js",
+        "src/client/css/mapbox-gl-draw.css", // has our own overrides
+        "node_modules/papaparse/papaparse.min.js",
         "node_modules/pretty-checkbox/dist/pretty-checkbox.min.css",
         "node_modules/accessible-autocomplete/dist/accessible-autocomplete.min.js",
         "node_modules/accessible-autocomplete/dist/accessible-autocomplete.min.css",
         "src/lib/jquery-ui-widgets-tabs.js",
         "src/lib/point-in-polygon.js",
+        "src/geom/geoJSON.js",
         "src/utils/utils.js",
         "src/client/js/new/filters.js",
         "src/client/js/new/polygon-draw.js",

docs/css/imerss-core.css

@@ -421,6 +421,12 @@
     cursor: pointer;
     width: 20px;
     height: 20px;
+    border-radius: 6px;
+}
+
+.imerss-filter-clear:hover {
+    /** TODO consolidate these, e.g. imerss-reset-filter */
+    background: #d0d7de33;
 }
 
 .imerss-filter-clear.imerss-hidden {

docs/css/imerss-viz-all.css

@@ -1117,6 +1117,12 @@ a.ui-button:active,
     cursor: pointer;
     width: 20px;
     height: 20px;
+    border-radius: 6px;
+}
+
+.imerss-filter-clear:hover {
+    /** TODO consolidate these, e.g. imerss-reset-filter */
+    background: #d0d7de33;
 }
 
 .imerss-filter-clear.imerss-hidden {

docs/css/imerss-viz-lib.css

@@ -1117,6 +1117,12 @@ a.ui-button:active,
     cursor: pointer;
     width: 20px;
     height: 20px;
+    border-radius: 6px;
+}
+
+.imerss-filter-clear:hover {
+    /** TODO consolidate these, e.g. imerss-reset-filter */
+    background: #d0d7de33;
 }
 
 .imerss-filter-clear.imerss-hidden {

docs/indexBeasOBA.html

@@ -6,14 +6,11 @@
 
         <title>Oregon Bee Atlas Plant-Pollinator Interactions</title>
 
-        <link rel="stylesheet" href="css/imerss-viz-lib.css" />
         <!-- Looks like this comes from here - use CDN since it refers to relative fonts
         https://github.com/Templarian/MaterialDesign-Webfont/releases/tag/v2.0.46 -->
         <link rel="stylesheet" href="https://cdn.materialdesignicons.com/2.0.46/css/materialdesignicons.min.css">
 
-        <script src="https://unpkg.com/[email protected]/papaparse.min.js"></script>
         <script src="https://unpkg.com/[email protected]/dist/d3.min.js"></script>
-        <script src="https://unpkg.com/@mapbox/[email protected]/dist/mapbox-gl-draw.js"></script>
         <script src="js/vizjs.js"></script>
         <script src="js/bipartitePP.js"></script>
 

src/buildSource/indexBeasOBA.html

@@ -6,14 +6,11 @@
 
         <title>Oregon Bee Atlas Plant-Pollinator Interactions</title>
 
-        <link rel="stylesheet" href="css/imerss-viz-lib.css" />
         <!-- Looks like this comes from here - use CDN since it refers to relative fonts
         https://github.com/Templarian/MaterialDesign-Webfont/releases/tag/v2.0.46 -->
         <link rel="stylesheet" href="https://cdn.materialdesignicons.com/2.0.46/css/materialdesignicons.min.css">
 
-        <script src="https://unpkg.com/[email protected]/papaparse.min.js"></script>
         <script src="https://unpkg.com/[email protected]/dist/d3.min.js"></script>
-        <script src="https://unpkg.com/@mapbox/[email protected]/dist/mapbox-gl-draw.js"></script>
         <script src="js/vizjs.js"></script>
         <script src="js/bipartitePP.js"></script>
 

src/client/css/imerss-core.css

@@ -421,6 +421,12 @@
     cursor: pointer;
     width: 20px;
     height: 20px;
+    border-radius: 6px;
+}
+
+.imerss-filter-clear:hover {
+    /** TODO consolidate these, e.g. imerss-reset-filter */
+    background: #d0d7de33;
 }
 
 .imerss-filter-clear.imerss-hidden {

src/client/js/new/polygon-draw.js

@@ -7,7 +7,7 @@ You may obtain a copy of the ECL 2.0 License and BSD License at
 https://github.com/fluid-project/infusion/raw/master/Infusion-LICENSE.txt
 */
 
-/* global MapboxDraw */
+/* global MapboxDraw, hortis */
 
 "use strict";
 

src/copyBeasOut.js

@@ -0,0 +1,68 @@
+/* eslint-env node */
+
+"use strict";
+
+const fs = require("fs-extra"),
+    path = require("path"),
+    fluid = require("infusion");
+
+require("../index.js");
+
+const config = {
+    target: "%b-team/docs/",
+    copyJobs: [
+        {
+            source: "%imerss-bioinfo/docs/indexBeasOBA.html",
+            target: "%b-team/docs/index.html"
+        },
+        "%imerss-bioinfo/docs/js/vizjs.js",
+        "%imerss-bioinfo/docs/js/bipartitePP.js",
+
+        "%imerss-bioinfo/docs/css/imerss-viz-lib.css",
+        "%imerss-bioinfo/docs/css/imerss-viz-new-core.css",
+        "%imerss-bioinfo/docs/css/imerss-viz-new.css",
+        "%imerss-bioinfo/docs/css/imerss-bbea.css",
+
+        "%imerss-bioinfo/docs/js/jquery.js",
+        "%imerss-bioinfo/docs/js/imerss-viz-lib.js",
+        "%imerss-bioinfo/docs/js/imerss-viz-new-core.js",
+        "%imerss-bioinfo/docs/js/imerss-viz-new.js",
+        "%imerss-bioinfo/docs/js/imerss-bbea.js",
+
+        "%imerss-bioinfo/docs/img/x-circle-close.svg",
+
+        "%imerss-bioinfo/docs/data/b-team/plant-pollinators-OBA-2-assigned-subset-labels.csv",
+        "%imerss-bioinfo/docs/data/b-team/plant-pollinators-OBA-2-assigned-taxa.csv",
+        "%imerss-bioinfo/docs/data/b-team/us-eco-l3-regions.csv"
+    ]
+};
+
+console.log(fluid.module.resolvePath("%imerss-bioinfo/"));
+
+const b_team = path.join(fluid.module.resolvePath("%imerss-bioinfo/"), "../b-team/");
+
+
+fluid.module.register("b-team", b_team, require);
+
+const copyOut = function () {
+    const defTarget = fluid.module.resolvePath(config.target);
+    const computeTarget = function (source) {
+        const dp = source.indexOf("/docs/");
+        const stem = source.substring(dp + "/docs/".length);
+        return path.join(defTarget, stem);
+    };
+
+    config.copyJobs.forEach(oneJob => {
+        const job = typeof(oneJob) === "string" ? {source: oneJob} : oneJob;
+        const source = fluid.module.resolvePath(job.source);
+        const target = job.target ? fluid.module.resolvePath(job.target) : computeTarget(job.source);
+
+        fs.ensureDirSync(path.dirname(target));
+        fs.copySync(source, target);
+
+        console.log("Copied ", source, " to ", target);
+    });
+
+};
+
+copyOut();