Corrected error in nextflow_schema

IPK-BIT · Jan 8, 2024 · a457c05 · a457c05
1 parent 8167f23
commit a457c05
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Showing 2 changed files with 19 additions and 0 deletions.
diff --git a/main.nf b/main.nf
@@ -54,6 +54,24 @@ process extractPhenotypes{
   """
 }
 
+// process extractCovariates{
+//   container 'quay.io/biocontainers/pandas:1.5.2'
+
+//   input:
+//     path(miappeFile)
+//     val(variable)
+//     path(sampleFile)
+//   output:
+//     path("${variable}.tsv")
+
+//   script:
+//   """
+//   #!/usr/bin/env python3
+//   import pandas as pd
+
+//   """
+// }
+
 process combineFamWithPhenotypes{
   container 'quay.io/biocontainers/plink:1.90b6.21--hec16e2b_4'
 

diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -19,6 +19,7 @@
                 },
                 "miappe": {
                     "type": "string",
+                    "format": "directory-path",
                     "fa_icon": "fas fa-archive",
                     "description": "Path to directory containing the MIAPPE ISA Tab files."
                 },