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52 Open 344 Closed
52 Open 344 Closed
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Issues list

in isatab.dump.write.py, error not caught in flatten() method
#569 opened Sep 6, 2024 by proccaserra
3 tasks
@proccaserra
sra_to_isatab_batch_convert from the develop branch does not work
#568 opened Aug 28, 2024 by tbrittoborges
Add new test to catch plink related issue when serializing to TAB enhancement
#566 opened Aug 5, 2024 by proccaserra
@proccaserra
1
Test deprecation messages clean-up
#563 opened Jul 12, 2024 by knirirr
ISA configurations & ISA-JSON
#559 opened Apr 29, 2024 by proccaserra
Test Data Validation Changes
#558 opened Mar 29, 2024 by ptth222
1
derives_from relation on Material
#545 opened Feb 29, 2024 by proccaserra
implement a guard in material.py enhancement
#543 opened Feb 23, 2024 by proccaserra
@proccaserra
refactoring needed in assay_templates.py to properly handle Ontology Source enhancement
#542 opened Feb 23, 2024 by proccaserra
3 tasks
@proccaserra
rewrite more atomic tests for Process sequence to elucidate counts of events
#541 opened Feb 23, 2024 by proccaserra
2 tasks
@proccaserra
Required Fields In Investigation XML Config
#540 opened Feb 23, 2024 by ptth222
investigation why magetab2json on MEXP31 can not complete isa.json validation following refactor bug
#537 opened Feb 21, 2024 by proccaserra
@proccaserra
documentation needed for requesting new context files for ISA documentation
#536 opened Feb 19, 2024 by proccaserra
2 tasks
@proccaserra
in datafile.py, ensure checkum_value can not be site if checksum_type is not specified enhancement
#535 opened Feb 19, 2024 by proccaserra
@proccaserra
Inconsistencies Between Code, Documentation, and Schema
#534 opened Feb 16, 2024 by ptth222
@proccaserra @terazus
5
Characteristic values are recast as string in ISA tab blocker bug
#523 opened Jan 23, 2024 by terazus
@proccaserra
ISA Tab Validation Rule Exception Messaging
#522 opened Jan 23, 2024 by ptth222
@proccaserra @terazus
1
ISA Validation Configurations Too Restrictive
#520 opened Jan 19, 2024 by ptth222
5
Add new tests to check serialization to TAB/JSON of Quantitative Values with Units (for Characterististics. FV, PV) documentation enhancement
#518 opened Jan 8, 2024 by proccaserra
2 tasks
@proccaserra
1
ISA converter - use of default configuration - update needed to cope with new assay definitions blocker bug documentation
#517 opened Jan 8, 2024 by proccaserra
5 tasks
@proccaserra
copy function invoked by json2isatab converter has side effects documentation enhancement
#516 opened Dec 18, 2023 by proccaserra
@proccaserra
ISATAB serialization: effect of presence/absence to "Term Source REF" "Term Accession" on parsing documentation
#515 opened Dec 18, 2023 by proccaserra
@proccaserra
Labeled Extract silently dropped from ISA JSON serialization if Label not declared bug
#513 opened Nov 10, 2023 by proccaserra
2 tasks
@proccaserra
create a helper function to compute checksums for all 'Data File' objects
#512 opened Nov 2, 2023 by proccaserra
4 of 5 tasks
Multiple Data Files of The Same Type Will Only Have 1 Name in Assay Conversion
#509 opened Nov 1, 2023 by ptth222
2
ProTip! Exclude everything labeled bug with -label:bug.