Master

.gitignore

@@ -12,6 +12,7 @@ imagepy/plugins/
 # Distribution / packaging
 .Python
 env/
+.metadata/
 build/
 develop-eggs/
 dist/
@@ -71,6 +72,7 @@ target/
 
 # IPython Notebook
 .ipynb_checkpoints
+.ipynb
 
 # pyenv
 .python-version
@@ -90,3 +92,7 @@ ENV/
 
 # Rope project settings
 .ropeproject
+
+# Pycharm project
+.idea/
+*.nov

environment.yml

@@ -0,0 +1,23 @@
+name: imagepy
+channels:
+  - conda-forge
+  - nsls2forge
+dependencies:
+  - numba
+  - numpy-stl
+  - openpyxl
+  - pandas
+  - pydicom
+  - pypubsub
+  - read-roi
+  - scikit-image
+  - scikit-learn
+  - shapely
+  - wxpython
+  - xlrd
+  - xlwt
+  - markdown
+  - python-markdown-math
+  - moderngl
+  - dulwich
+  - pystackreg

imagepy/__init__.py

@@ -1,16 +1,2 @@
-#from __future__ import absolute_import
 import os.path as osp
-import sys, os, wx
-
-from .IPy import *
 root_dir = osp.abspath(osp.dirname(__file__))
-os.chdir(root_dir)
-# sys.path.append(root_dir)
-
-from .ui.mainframe import ImagePy
-
-def show(ui = True):
-	app = wx.App(False)
-	mainFrame = ImagePy(None)
-	mainFrame.Show()
-	app.MainLoop()

imagepy/__main__.py

@@ -1,4 +1,4 @@
-import sys, os
-sys.path.append('..')
-import imagepy
-imagepy.show()
+import sys
+sys.path.append('../')
+from imagepy.app import startup
+startup.start()

imagepy/app/__init__.py

@@ -0,0 +1,6 @@
+from .imagepy import ImagePy
+from .imagej import ImageJ
+from .console import Console
+from .import startup
+
+from .manager import ConfigManager, ShortcutManager, ColorManager, DictManager, DocumentManager

imagepy/app/console.py

@@ -0,0 +1,21 @@
+from sciapp import App, Source
+from imagepy import root_dir
+from .startup import load_plugins
+
+class Console(App):
+    def __init__( self ):
+        App.__init__(self, False)
+
+    def load_plugins(self, plgs=None):
+        if plgs is None: plgs = load_plugins()[0]
+        if isinstance(plgs, tuple):
+            if callable(plgs[1]): 
+                name, plg = plgs[:2]
+                self.add_plugin(name, plg, 'plugin')
+            else: self.load_plugins(plgs[1])
+        if isinstance(plgs, list):
+            for i in plgs: self.load_plugins(i)
+
+if __name__ == '__main__':
+    import numpy as np
+    import pandas as pd