Tests

Merge pull request #218 from ImperialCollegeLondon/release-candidates… #284

	name: "Tests"
	on:
	pull_request:
	branches:
	- main
	paths:
	- pyprobe/*
	- tests/*
	- docs/source/examples/*ipynb
	- pyproject.toml
	- .github/workflows/ci.yml
	- uv.lock
	push:
	branches:
	- main
	paths:
	- pyprobe/*
	- tests/*
	- pyproject.toml
	- .github/workflows/ci.yml
	- uv.lock
	workflow_dispatch:
	jobs:
	test:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v4
	- name: Install uv
	uses: astral-sh/setup-uv@v5
	with:
	# Install a specific version of uv.
	version: "0.5.22"

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version-file: "pyproject.toml"

	- name: Install the project
	run: \|
	uv venv --seed
	uv sync --all-extras --frozen

	- name: Run tests
	run: uv run pytest tests --benchmark-json output.json --cov-report=xml

	- name: Store benchmark result
	uses: benchmark-action/github-action-benchmark@v1
	with:
	name: Python Benchmark with pytest-benchmark
	tool: 'pytest'
	output-file-path: output.json
	# Use personal access token instead of GITHUB_TOKEN due to https://github.community/t/github-action-not-triggering-gh-pages-upon-push/16096
	github-token: ${{ secrets.GITHUB_TOKEN }}
	# Show alert with commit comment on detecting possible performance regression
	alert-threshold: '110%'
	comment-on-alert: true
	# Enable Job Summary for PRs
	summary-always: true
	- name: Test notebooks
	if: github.event_name == 'pull_request'
	run: uv run pytest --nbmake docs/source/examples/*ipynb

	- name: Upload coverage reports to Codecov
	uses: codecov/codecov-action@v5
	with:
	token: ${{ secrets.CODECOV_TOKEN }}

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