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Add small dataset for profiling #450

Add small dataset for profiling

Add small dataset for profiling #450

Workflow file for this run

name: Test and build
on: [push, pull_request, release]
jobs:
qa:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: "3.11"
- uses: pre-commit/[email protected]
test:
needs: qa
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ ubuntu-latest, macos-latest, windows-latest ]
python-version: [ "3.9" , "3.10", "3.11"]
steps:
- uses: actions/checkout@v3
with:
lfs: true
- uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install Poetry
uses: abatilo/[email protected]
with:
poetry-version: 1.2.2
- name: Install dependencies
run: poetry install
- name: Run tests
run: poetry run pytest -m "not profiling" --cov-report xml
- name: Run profiling
if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.9
# && github.ref == 'refs/heads/main'
run: |
git lfs pull
poetry run pytest -m "profiling" --profile-svg
# mv prof/combined.svg profiling/profiling.svg
mv prof/combined.prof profiling/profiling.prof
python profiling/report.py
echo "REPORT=1" >> $GITHUB_ENV
- name: Generate report
if: env.REPORT == 1
uses: stefanzweifel/git-auto-commit-action@v5
with:
commit_message: Automated report
file_pattern: '*.csv *.png *.svg'
- name: Upload coverage reports to Codecov
if: success() && (matrix.os == 'ubuntu-latest' && matrix.python-version == 3.9)
uses: codecov/codecov-action@v3
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
docs_build:
needs: qa
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: "3.11"
- name: Install Poetry
uses: abatilo/[email protected]
with:
poetry-version: 1.2.2
- name: Install dependencies
run: poetry install
- name: Set ipython kernel
run: poetry run python -m ipykernel install --user --name=pyrealm_python3
- name: Build docs using sphinx
run: |
cd docs
poetry run sphinx-build -W --keep-going source build
- name: Archive built docs for error checking on failure
if: failure()
uses: actions/upload-artifact@v3
with:
name: built-docs
path: docs/build
retention-days: 2