debug CI

.github/workflows/pyrealm_ci.yaml

@@ -26,6 +26,13 @@ jobs:
       with:
         lfs: true
 
+    - if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.9
+      run: |
+        git lfs pull
+        git checkout pyrealm_build_data/*.nc
+
+    - uses: stefanzweifel/git-auto-commit-action@v5
+
     - uses: actions/setup-python@v4
       with:
         python-version: ${{ matrix.python-version }}
@@ -52,14 +59,16 @@ jobs:
         poetry run python profiling/report.py
 
     - name: Remove LFS objects
-      run: git checkout pyrealm_build_data/
+      run: git checkout pyrealm_build_data/*.nc
 
     - name: Generate report
       uses: stefanzweifel/git-auto-commit-action@v5
       if: steps.profiling.outcome == 'success'
       with:
         file_pattern: 'profiling/*'
         commit_message: Auto-generated report
+        skip_fetch: true
+        skip_checkout: true
 
     - name: Upload coverage reports to Codecov
       if: success() && (matrix.os == 'ubuntu-latest' && matrix.python-version == 3.9)