debug CI

.github/workflows/pyrealm_ci.yaml

@@ -24,7 +24,7 @@ jobs:
     steps:
     - uses: actions/checkout@v3
       with:
-        lfs: true
+        ref: ${{ github.head_ref }}
 
     - uses: actions/setup-python@v4
       with:
@@ -42,23 +42,22 @@ jobs:
     #   run: poetry run pytest -m "not profiling" --cov-report xml
 
     - name: Run profiling
-      if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.9
-      # && github.ref == 'refs/heads/main'
+      id: profiling
+      if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.9 # && github.ref == 'refs/heads/main'
       run: |
         git lfs pull
-        git update-index --assume-unchanged pyrealm_build_data/*.nc
         poetry run pytest -m "profiling" --profile-svg
-        # mv prof/combined.svg profiling/profiling.svg
         mv prof/combined.prof profiling/profiling.prof
+        # mv prof/combined.svg profiling/profiling.svg
         poetry run python profiling/report.py
-        echo "REPORT=1" >> $GITHUB_ENV
+        rm pyrealm_build_data/*.nc
 
     - name: Generate report
-      if: env.REPORT == 1
       uses: stefanzweifel/git-auto-commit-action@v5
+      if: steps.profiling.outcome == 'success'
       with:
-        commit_message: Automated report
-        file_pattern: '*.csv *.png *.svg'
+        file_pattern: 'profiling/*'
+        commit_message: Auto-generated report
 
     - name: Upload coverage reports to Codecov
       if: success() && (matrix.os == 'ubuntu-latest' && matrix.python-version == 3.9)