Candidate release v.3.0.1rc2 [test-pypi-only]

What's Changed

• Updating get_taxa to more stringent checking by @davidorme in #1
• Updated taxon checking to allow users to flag new taxa with an asteri… by @davidorme in #2
• Taxon checking by @davidorme in #3
• GBIF validation by @davidorme in #4
• Integrating NCBI functionality by @jacobcook1995 in #8
• Restructure of dataworksheet logging to give cleaner output, tests re… by @davidorme in #9
• Ncbi config by @jacobcook1995 in #10
• Combined binomial and trinomial into a single function by @jacobcook1995 in #11
• Feature/fixing zenodo workflow by @davidorme in #12
• Feature/taxa mypy by @jacobcook1995 in #13
• Feature/mypy fixing by @davidorme in #21
• Feature/ncbi taxa tree by @jacobcook1995 in #17
• Feature/fix taxa tree by @jacobcook1995 in #23
• Added mocked test of status codes by @jacobcook1995 in #19
• Feature/taxon timestamps by @davidorme in #24
• Fixes typos that Vivienne noticed by @jacobcook1995 in #30
• Remove remote/online taxon validation option by @davidorme in #32
• Feature/zenodo workflow fixes by @davidorme in #37
• Updating location data setup by @davidorme in #38
• Bug/taxa in descriptions by @davidorme in #40
• Fixes to a couple of documentation problems by @jacobcook1995 in #41
• Removing old files/folders and updating .gitignore by @davidorme in #42
• Feature/cleaning for 300 by @davidorme in #43
• Added release branch and poetry details to the README by @jacobcook1995 in #44
• Feature/cleanup publication docs by @jacobcook1995 in #45
• Fixing precommit isort config by @davidorme in #55
• Allow unverified metadata servers by @davidorme in #56
• mypy fixes + improved CI procedure by @jacobcook1995 in #59
• Handle metadata for trailing empty fields by @davidorme in #61
• Added taxon header validation by @jacobcook1995 in #62
• Make project IDs optional by @jacobcook1995 in #65
• Fixes a couple of security venerabilities for release 3.0 by @jacobcook1995 in #68
• Update of mkdocs system and docs content by @davidorme in #71
• Add docs build step to the CI by @jacobcook1995 in #72
• Prevent Exception on empty data sheets by @davidorme in #73
• Exception with GBIF 2016-07-25 database by @davidorme in #74
• Updated certifi version by @jacobcook1995 in #82
• Fix bug for entirely empty chunks of rows by @jacobcook1995 in #83
• Assorted minor bugfixes by @davidorme in #92
• Update logging to allow output to text file. by @davidorme in #93
• Big restructure of data manager documentation by @davidorme in #95
• Documentation check + update by @jacobcook1995 in #79
• Implements the project database configuration by @davidorme in #96
• Restructure of taxa worksheet handling by @davidorme in #97
• Updating safedata_server to safedata_metadata by @davidorme in #99
• Bump jinja2 from 3.1.2 to 3.1.3 by @dependabot in #101
• Updating server resources upload by @davidorme in #103
• Add args list to cli entry points to facilitate debugging by @davidorme in #108
• Fix broken HTML and XML local generation by @davidorme in #111
• Fixing OS specific issues with logging by @davidorme in #114
• Update taxon builder tools by @davidorme in #115
• Bump black from 22.12.0 to 24.3.0 by @dependabot in #118
• Bump idna from 3.6 to 3.7 by @dependabot in #119
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #117
• Making 3.10 the minimum version by @jacobcook1995 in #121
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #122
• Bugfix/summary whitespace by @jacobcook1995 in #129
• Bug fix/sheet name docs by @jacobcook1995 in #130
• Fixing weird Shapely related test failures by @jacobcook1995 in #132
• Added note to say that Unknown should be used for missing permit numbers by @jacobcook1995 in #131
• Release/3.0.1 by @davidorme in #134
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #135
• Fix XML distribution flow by @davidorme in #136
• Bump tqdm from 4.66.2 to 4.66.3 by @dependabot in #139
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #140
• Bump jinja2 from 3.1.3 to 3.1.4 by @dependabot in #141
• Customisable Zenodo HTML by @davidorme in #138
• Command line workflow updates by @davidorme in #142
• Switching to using ruff by @jacobcook1995 in #146
• Adding an example file to the documentation by @jacobcook1995 in #145
• Bump requests from 2.31.0 to 2.32.0 by @dependabot in #149
• Validation passes with no worksheets by @davidorme in #144
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #148
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #150
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #151
• Added ruff specific formatting options by @jacobcook1995 in #153
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #155
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #156
• Bump urllib3 from 2.2.1 to 2.2.2 by @dependabot in #157
• Add 3.12 to the CI by @jacobcook1995 in #154
• Add publishing workflow and make CI workflow reusable by @davidorme in #159

New Contributors

• @jacobcook1995 made their first contribution in #8
• @dependabot made their first contribution in #101
• @pre-commit-ci made their first contribution in #117

Full Changelog: https://github.com/ImperialCollegeLondon/safedata_validator/commits/3.0.1rc2