RC CRAN 0.10.0 (#811)

* bump version for CRAN; rm library calls * docs * Address `unnecessary_placeholder_linter()` lints * minor code cleanup * Update utils.R * Create check-link-rot.yaml * Update check-link-rot.yaml * Update check-link-rot.yaml * Update check-link-rot.yaml * minor * Create pkgdown-no-suggests.yaml * yaml formatting * Create check-all-examples.yaml * fix pkgdown no suggests * fix pkgdown issue * fix pkgdown and lint issues * fix more pkgdown no suggests * DRY vignette setup * Update ggbetweenstats.Rmd * sync up actions * bump easystats versions * start DRYing up vignettes * for `ggwithinstats()` * reporting * fix? * more functions * add rest of the fragments * add examples for `extract_stats()`
IndrajeetPatil · Nov 27, 2022 · 2a7ee97 · 2a7ee97
1 parent 80cf42e
commit 2a7ee97
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diff --git a/.Rbuildignore b/.Rbuildignore
@@ -17,7 +17,7 @@
 ^docs$
 ^revdep$
 publication/*
-^codecov\.yml$
+^codecov\.yaml$
 ^\.coveralls\.yml$
 ^\.travis\.yml$
 ^_pkgdown\.yml$

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -20,16 +20,16 @@ jobs:
       matrix:
         config:
           #- {os: macos-latest,   r: 'devel'}
-          - {os: macos-latest,   r: 'release'}
-          - {os: macos-latest,   r: 'oldrel-1'}
+          - { os: macos-latest, r: "release" }
+          - { os: macos-latest, r: "oldrel-1" }
 
-          - {os: windows-latest, r: 'devel'}
-          - {os: windows-latest, r: 'release'}
-          - {os: windows-latest, r: 'oldrel-1'}
+          - { os: windows-latest, r: "devel" }
+          - { os: windows-latest, r: "release" }
+          - { os: windows-latest, r: "oldrel-1" }
 
-          - {os: ubuntu-latest,  r: 'devel', http-user-agent: 'release'}
-          - {os: ubuntu-latest,  r: 'release'}
-          - {os: ubuntu-latest,  r: 'oldrel-1'}
+          - { os: ubuntu-latest, r: "devel", http-user-agent: "release" }
+          - { os: ubuntu-latest, r: "release" }
+          - { os: ubuntu-latest, r: "oldrel-1" }
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
@@ -40,7 +40,7 @@ jobs:
 
       - uses: r-lib/actions/setup-pandoc@v2
         with:
-          pandoc-version: '2.19.2'
+          pandoc-version: "2.19.2"
 
       - uses: r-lib/actions/setup-r@v2
         with:

diff --git a/.github/workflows/check-all-examples.yaml b/.github/workflows/check-all-examples.yaml
@@ -0,0 +1,42 @@
+# Make sure all examples run successfully, even the ones that are not supposed
+# to be run or tested on CRAN machines by default.
+#
+# The examples that fail should use
+#  - `if (FALSE) { ... }` (if example is included only for illustrative purposes)
+#  - `try({ ... })` (if the intent is to show the error)
+#
+# This workflow helps find such failing examples that need to be modified.
+
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: check-all-examples
+
+jobs:
+  check-all-examples:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          pak-version: devel
+          extra-packages: |
+            any::devtools
+            local::.
+
+      - name: Run examples
+        run: |
+          options(crayon.enabled = TRUE)
+          devtools::run_examples(fresh = TRUE, run_dontrun = TRUE, run_donttest = TRUE)
+        shell: Rscript {0}
diff --git a/.github/workflows/check-link-rot.yaml b/.github/workflows/check-link-rot.yaml
@@ -0,0 +1,43 @@
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: check-link-rot
+
+jobs:
+  check-link-rot:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-pandoc@v2
+        with:
+          pandoc-version: "2.19.2"
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: "devel"
+          http-user-agent: "release"
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          pak-version: devel
+          extra-packages: |
+            any::rcmdcheck
+            any::urlchecker
+
+      - name: Run URL checker
+        run: |
+          options(crayon.enabled = TRUE)
+          rotten_links <- urlchecker::url_check(progress = FALSE)
+          print(rotten_links)
+          if (length(rotten_links$URL) > 0L) {
+            stop("Some URLs are outdated and need to be updated.", call. = FALSE)
+          }
+        shell: Rscript {0}
diff --git a/.github/workflows/check-readme.yaml b/.github/workflows/check-readme.yaml
@@ -49,4 +49,7 @@ jobs:
             any::ggthemes
 
       - name: Render README
-        run: Rscript -e 'rmarkdown::render("README.Rmd")'
+        run: |
+          options(crayon.enabled = TRUE)
+          rmarkdown::render("README.Rmd")
+        shell: Rscript {0}
diff --git a/.github/workflows/html-5-check.yaml b/.github/workflows/html-5-check.yaml
@@ -26,7 +26,9 @@ jobs:
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           pak-version: devel
-          extra-packages: any::rcmdcheck
+          extra-packages: |
+            any::rcmdcheck
+            any::V8
           dependencies: "character()"
 
       - name: Install pdflatex

diff --git a/.github/workflows/lint.yaml b/.github/workflows/lint.yaml
@@ -45,5 +45,5 @@ jobs:
             todo_comment_linter = NULL,
             undesirable_function_linter = NULL,
             defaults = linters_with_tags(tags = NULL)
-          ))
+          ), exclusions = list("data-raw"))
         shell: Rscript {0}
diff --git a/.github/workflows/pkgdown-no-suggests.yaml b/.github/workflows/pkgdown-no-suggests.yaml
@@ -0,0 +1,54 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+#
+#  NOTE: The {pkgdown} workflow in "noSuggests" mode makes sure that the vignettes or
+# examples evaluated only on the website are also using soft dependencies conditionally.
+
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: pkgdown-no-suggests
+
+jobs:
+  pkgdown-no-suggests:
+    runs-on: ubuntu-latest
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v3
+
+      # Always try to use the latest pandoc version
+      # https://github.com/jgm/pandoc/releases
+      - uses: r-lib/actions/setup-pandoc@v2
+        with:
+          pandoc-version: "2.19.2"
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: "release"
+          http-user-agent: "release"
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          pak-version: devel
+          dependencies: '"hard"'
+          cache: false
+          extra-packages: |
+            any::knitr
+            any::rmarkdown
+            r-lib/pkgdown
+            local::.
+          needs: website
+
+      - name: Build site
+        run: |
+          options(crayon.enabled = TRUE)
+          pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
@@ -24,7 +24,7 @@ jobs:
 
       - uses: r-lib/actions/setup-pandoc@v2
         with:
-          pandoc-version: '2.19.2'
+          pandoc-version: "2.19.2"
 
       - uses: r-lib/actions/setup-r@v2
         with:
@@ -33,11 +33,16 @@ jobs:
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           pak-version: devel
-          extra-packages: r-lib/pkgdown, local::.
+          extra-packages: |
+            r-lib/pkgdown
+            local::.
           needs: website
 
       - name: Build site
-        run: Rscript -e 'pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)'
+        run: |
+          options(crayon.enabled = TRUE)
+          pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
 
       - name: Deploy to GitHub pages 🚀
         if: github.event_name != 'pull_request'

diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
@@ -19,14 +19,18 @@ jobs:
 
       - uses: r-lib/actions/setup-r@v2
         with:
+          http-user-agent: "release"
           use-public-rspm: true
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           pak-version: devel
-          extra-packages: r-lib/covr
+          extra-packages: |
+            r-lib/covr
           needs: coverage
 
       - name: Test coverage
-        run: covr::codecov(quiet = FALSE)
+        run: |
+          options(crayon.enabled = TRUE)
+          covr::codecov(quiet = FALSE)
         shell: Rscript {0}