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cran submission 0.3.0
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IndrajeetPatil committed Mar 1, 2020
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4 changes: 2 additions & 2 deletions CRAN-RELEASE
Original file line number Diff line number Diff line change
@@ -1,2 +1,2 @@
This package was submitted to CRAN on 2020-02-02.
Once it is accepted, delete this file and tag the release (commit 2e5fcbda8c).
This package was submitted to CRAN on 2020-03-01.
Once it is accepted, delete this file and tag the release (commit ef42b20517).
16 changes: 10 additions & 6 deletions NEWS.md
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Expand Up @@ -6,11 +6,12 @@ To give users more flexibility in terms of modifying the aesthetic defaults for
**all** `geoms` included in the `ggstatsplot` plots (each plot typically has
multiple geoms), the package now uses a new form of syntax. Previously, each
`geom` had a separate argument to specify each aesthetic (e.g., `geom_point`
would get `point.size`, `point.color`, etc.), which resulted in functions with a
massive number of arguments and was unsustainable in the long run. Instead,
`ggstatsplot` functions now expect a list of such arguments for the respective
geom (e.g., `geom_point` will have `point.args` argument where a list of
arguments `list(size = 5, color = "darkgreen", alpha = 0.8)` can be supplied).
would get arguments like `point.size`, `point.color`, etc.), which resulted in
functions with a massive number of arguments and was unsustainable in the long
run. Instead, `ggstatsplot` functions now expect a list of such arguments for
the respective geom (e.g., `geom_point` will have `point.args` argument where a
list of arguments `list(size = 5, color = "darkgreen", alpha = 0.8)` can be
supplied).

- All `grouped_` functions have been refactored to reduce the number of
arguments. These functions now internally use the new `combine_plots2`
Expand Down Expand Up @@ -49,7 +50,7 @@ arguments `list(size = 5, color = "darkgreen", alpha = 0.8)` can be supplied).

- `gghistostats` loses the following arguments: `fill.gradient`, `low.color`,
`high.color`. It made no sense to add a color gradient to this plot when the
Y-axis already displayed the information about what bar represented.
Y-axis already displayed the information about what the bar represented.

- `ggscatterstats` loses the following arguments: `palette` and `package`.
Since this function requires only two colors, it didn't make much sense to
Expand All @@ -66,7 +67,9 @@ MAJOR CHANGES

- `ggcorrmat` was never supposed to work with Kendall's correlation coefficient
but it accidentally did. This is no longer the case.

- `ggstatsplot` now has a logo, thanks to Sarah! :)

- The default `theme_ggstatsplot` changes slightly. The biggest change is that
the title and the subtitle for plots are now aligned to the left of the
plot. This change also forced the legend for `ggpiestats` to be displayed
Expand All @@ -76,6 +79,7 @@ MINOR CHANGES

- More models supported in `ggcoefstats`: `BBreg`, `bcplm`, `bife`, `cglm`,
`crch`, `DirichReg`, `LORgee`, `zcpglm`, `zeroinfl`.

- Following functions are now re-exported from `ipmisc`: `bartlett_message`,
`normality_message`. A few other internal data wrangling functions now
reside in `ipmisc`.
Expand Down
4 changes: 2 additions & 2 deletions cran-comments.md
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Expand Up @@ -5,6 +5,6 @@

## R CMD check results

0 errors | 0 warnings | 1 notes
0 errors | 0 warnings | 0 notes

- Makes `ggstatsplot` compatible with the new release of `pairwiseComparisons`.
- Maintenance release and major internal refactoring.
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3 changes: 1 addition & 2 deletions docs/pkgdown.yml
Original file line number Diff line number Diff line change
@@ -1,9 +1,8 @@
pandoc: 2.8.0.1
pandoc: 2.9.2
pkgdown: 1.4.1.9000
pkgdown_sha: 5e873fd9e478dddd784c31d8c8f994fd4b341c2a
articles:
additional: additional.html
tests_and_coverage: tests_and_coverage.html
combine_plots: web_only/combine_plots.html
effsize_interpretation: web_only/effsize_interpretation.html
faq: web_only/faq.html
Expand Down
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4 comments on commit 84eff3f

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R/ggbarstats.R:51:1: style: functions should have cyclomatic complexity of less than 15, this has 20.

ggbarstats <- function(data,
^

R/ggbetweenstats.R:186:1: style: functions should have cyclomatic complexity of less than 15, this has 26.

ggbetweenstats <- function(data,
^

R/ggcoefstats.R:269:1: style: functions should have cyclomatic complexity of less than 15, this has 55.

ggcoefstats <- function(x,
^

R/ggcorrmat.R:141:1: style: functions should have cyclomatic complexity of less than 15, this has 24.

ggcorrmat <- function(data,
^

R/gghistostats.R:70:1: style: functions should have cyclomatic complexity of less than 15, this has 19.

gghistostats <- function(data,
^

R/ggpiestats.R:93:1: style: functions should have cyclomatic complexity of less than 15, this has 21.

ggpiestats <- function(data,
^

R/ggscatterstats.R:94:1: style: functions should have cyclomatic complexity of less than 15, this has 29.

ggscatterstats <- function(data,
^

R/ggwithinstats.R:68:1: style: functions should have cyclomatic complexity of less than 15, this has 24.

ggwithinstats <- function(data,
^

tests/testthat/test-ggcoefstats.R:328:1: style: Lines should not be more than 100 characters.

"list(~italic(F)(1*\",\"*28)==118.89, ~italic(p)<= 0.001, ~widehat(italic(eta)[p]^2)==0.81)",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-ggcoefstats.R:417:1: style: Lines should not be more than 100 characters.

"list(~italic(F)(3*\",\"*35)==7.388, ~italic(p)== 0.001, ~widehat(italic(omega)[p]^2)==0.308)",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-ggcoefstats.R:418:1: style: Lines should not be more than 100 characters.

"list(~italic(F)(1*\",\"*35)==2.034, ~italic(p)== 0.163, ~widehat(italic(omega)[p]^2)==0.023)",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-ggcoefstats.R:419:1: style: Lines should not be more than 100 characters.

"list(~italic(F)(3*\",\"*35)==4.012, ~italic(p)== 0.015, ~widehat(italic(omega)[p]^2)==0.174)"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-ggwithinstats.R:330:7: style: Commented code should be removed.

# testthat::expect_equal(levels(pb1$data[[8]]$annotation), c("*", "**"))
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:112:17: style: Commented code should be removed.

#           "list(~italic(p)[ unadjusted ]== 0.825 )"
                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:114:15: style: Commented code should be removed.

#         class = "factor"
              ^~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:125:15: style: Commented code should be removed.

#         class = "factor"
              ^~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:133:15: style: Commented code should be removed.

#         class = "factor"
              ^~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:171:13: style: Commented code should be removed.

#       size = c(0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5)
            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:177:11: style: Commented code should be removed.

#     class = "data.frame"
          ^~~~~~~~~~~~~~~~~~~~

@lintr-bot
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Choose a reason for hiding this comment

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R/ggbarstats.R:51:1: style: functions should have cyclomatic complexity of less than 15, this has 20.

ggbarstats <- function(data,
^

R/ggbetweenstats.R:186:1: style: functions should have cyclomatic complexity of less than 15, this has 26.

ggbetweenstats <- function(data,
^

R/ggcoefstats.R:269:1: style: functions should have cyclomatic complexity of less than 15, this has 55.

ggcoefstats <- function(x,
^

R/ggcorrmat.R:141:1: style: functions should have cyclomatic complexity of less than 15, this has 24.

ggcorrmat <- function(data,
^

R/gghistostats.R:70:1: style: functions should have cyclomatic complexity of less than 15, this has 19.

gghistostats <- function(data,
^

R/ggpiestats.R:93:1: style: functions should have cyclomatic complexity of less than 15, this has 21.

ggpiestats <- function(data,
^

R/ggscatterstats.R:94:1: style: functions should have cyclomatic complexity of less than 15, this has 29.

ggscatterstats <- function(data,
^

R/ggwithinstats.R:68:1: style: functions should have cyclomatic complexity of less than 15, this has 24.

ggwithinstats <- function(data,
^

tests/testthat/test-ggcoefstats.R:328:1: style: Lines should not be more than 100 characters.

"list(~italic(F)(1*\",\"*28)==118.89, ~italic(p)<= 0.001, ~widehat(italic(eta)[p]^2)==0.81)",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-ggcoefstats.R:417:1: style: Lines should not be more than 100 characters.

"list(~italic(F)(3*\",\"*35)==7.388, ~italic(p)== 0.001, ~widehat(italic(omega)[p]^2)==0.308)",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-ggcoefstats.R:418:1: style: Lines should not be more than 100 characters.

"list(~italic(F)(1*\",\"*35)==2.034, ~italic(p)== 0.163, ~widehat(italic(omega)[p]^2)==0.023)",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-ggcoefstats.R:419:1: style: Lines should not be more than 100 characters.

"list(~italic(F)(3*\",\"*35)==4.012, ~italic(p)== 0.015, ~widehat(italic(omega)[p]^2)==0.174)"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-ggwithinstats.R:330:7: style: Commented code should be removed.

# testthat::expect_equal(levels(pb1$data[[8]]$annotation), c("*", "**"))
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:112:17: style: Commented code should be removed.

#           "list(~italic(p)[ unadjusted ]== 0.825 )"
                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:114:15: style: Commented code should be removed.

#         class = "factor"
              ^~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:125:15: style: Commented code should be removed.

#         class = "factor"
              ^~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:133:15: style: Commented code should be removed.

#         class = "factor"
              ^~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:171:13: style: Commented code should be removed.

#       size = c(0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5)
            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:177:11: style: Commented code should be removed.

#     class = "data.frame"
          ^~~~~~~~~~~~~~~~~~~~

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Copy link

Choose a reason for hiding this comment

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R/ggbarstats.R:51:1: style: functions should have cyclomatic complexity of less than 15, this has 20.

ggbarstats <- function(data,
^

R/ggbetweenstats.R:186:1: style: functions should have cyclomatic complexity of less than 15, this has 26.

ggbetweenstats <- function(data,
^

R/ggcoefstats.R:269:1: style: functions should have cyclomatic complexity of less than 15, this has 55.

ggcoefstats <- function(x,
^

R/ggcorrmat.R:141:1: style: functions should have cyclomatic complexity of less than 15, this has 24.

ggcorrmat <- function(data,
^

R/gghistostats.R:70:1: style: functions should have cyclomatic complexity of less than 15, this has 19.

gghistostats <- function(data,
^

R/ggpiestats.R:93:1: style: functions should have cyclomatic complexity of less than 15, this has 21.

ggpiestats <- function(data,
^

R/ggscatterstats.R:94:1: style: functions should have cyclomatic complexity of less than 15, this has 29.

ggscatterstats <- function(data,
^

R/ggwithinstats.R:68:1: style: functions should have cyclomatic complexity of less than 15, this has 24.

ggwithinstats <- function(data,
^

tests/testthat/test-ggcoefstats.R:328:1: style: Lines should not be more than 100 characters.

"list(~italic(F)(1*\",\"*28)==118.89, ~italic(p)<= 0.001, ~widehat(italic(eta)[p]^2)==0.81)",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-ggcoefstats.R:417:1: style: Lines should not be more than 100 characters.

"list(~italic(F)(3*\",\"*35)==7.388, ~italic(p)== 0.001, ~widehat(italic(omega)[p]^2)==0.308)",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-ggcoefstats.R:418:1: style: Lines should not be more than 100 characters.

"list(~italic(F)(1*\",\"*35)==2.034, ~italic(p)== 0.163, ~widehat(italic(omega)[p]^2)==0.023)",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-ggcoefstats.R:419:1: style: Lines should not be more than 100 characters.

"list(~italic(F)(3*\",\"*35)==4.012, ~italic(p)== 0.015, ~widehat(italic(omega)[p]^2)==0.174)"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-ggwithinstats.R:330:7: style: Commented code should be removed.

# testthat::expect_equal(levels(pb1$data[[8]]$annotation), c("*", "**"))
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:112:17: style: Commented code should be removed.

#           "list(~italic(p)[ unadjusted ]== 0.825 )"
                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:114:15: style: Commented code should be removed.

#         class = "factor"
              ^~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:125:15: style: Commented code should be removed.

#         class = "factor"
              ^~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:133:15: style: Commented code should be removed.

#         class = "factor"
              ^~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:171:13: style: Commented code should be removed.

#       size = c(0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5)
            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:177:11: style: Commented code should be removed.

#     class = "data.frame"
          ^~~~~~~~~~~~~~~~~~~~

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Copy link

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R/ggbarstats.R:51:1: style: functions should have cyclomatic complexity of less than 15, this has 20.

ggbarstats <- function(data,
^

R/ggbetweenstats.R:186:1: style: functions should have cyclomatic complexity of less than 15, this has 26.

ggbetweenstats <- function(data,
^

R/ggcoefstats.R:269:1: style: functions should have cyclomatic complexity of less than 15, this has 55.

ggcoefstats <- function(x,
^

R/ggcorrmat.R:141:1: style: functions should have cyclomatic complexity of less than 15, this has 24.

ggcorrmat <- function(data,
^

R/gghistostats.R:70:1: style: functions should have cyclomatic complexity of less than 15, this has 19.

gghistostats <- function(data,
^

R/ggpiestats.R:93:1: style: functions should have cyclomatic complexity of less than 15, this has 21.

ggpiestats <- function(data,
^

R/ggscatterstats.R:94:1: style: functions should have cyclomatic complexity of less than 15, this has 29.

ggscatterstats <- function(data,
^

R/ggwithinstats.R:68:1: style: functions should have cyclomatic complexity of less than 15, this has 24.

ggwithinstats <- function(data,
^

tests/testthat/test-ggcoefstats.R:328:1: style: Lines should not be more than 100 characters.

"list(~italic(F)(1*\",\"*28)==118.89, ~italic(p)<= 0.001, ~widehat(italic(eta)[p]^2)==0.81)",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-ggcoefstats.R:417:1: style: Lines should not be more than 100 characters.

"list(~italic(F)(3*\",\"*35)==7.388, ~italic(p)== 0.001, ~widehat(italic(omega)[p]^2)==0.308)",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-ggcoefstats.R:418:1: style: Lines should not be more than 100 characters.

"list(~italic(F)(1*\",\"*35)==2.034, ~italic(p)== 0.163, ~widehat(italic(omega)[p]^2)==0.023)",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-ggcoefstats.R:419:1: style: Lines should not be more than 100 characters.

"list(~italic(F)(3*\",\"*35)==4.012, ~italic(p)== 0.015, ~widehat(italic(omega)[p]^2)==0.174)"
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-ggwithinstats.R:330:7: style: Commented code should be removed.

# testthat::expect_equal(levels(pb1$data[[8]]$annotation), c("*", "**"))
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:112:17: style: Commented code should be removed.

#           "list(~italic(p)[ unadjusted ]== 0.825 )"
                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:114:15: style: Commented code should be removed.

#         class = "factor"
              ^~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:125:15: style: Commented code should be removed.

#         class = "factor"
              ^~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:133:15: style: Commented code should be removed.

#         class = "factor"
              ^~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:171:13: style: Commented code should be removed.

#       size = c(0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5)
            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

tests/testthat/test-pairwise_ggsignif.R:177:11: style: Commented code should be removed.

#     class = "data.frame"
          ^~~~~~~~~~~~~~~~~~~~

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