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Dockerfile updated
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ashish615 committed Sep 4, 2024
1 parent b319742 commit 7e0134c
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4 changes: 1 addition & 3 deletions pipelines/single-cell-RNA-seq-analysis/Dockerfile
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Expand Up @@ -59,9 +59,7 @@ RUN groupadd --gid 1001 $SERVICE_NAME && \

RUN pip uninstall -y umap-learn
WORKDIR /
RUN wget https://github.com/IntelLabs/Open-Omics-Acceleration-Framework/releases/download/2.1/Source_code_with_submodules.tar.gz
RUN tar -xzf Source_code_with_submodules.tar.gz
#RUN git clone --recursive https://github.com/IntelLabs/Open-Omics-Acceleration-Framework.git
RUN git clone --recursive https://github.com/IntelLabs/Open-Omics-Acceleration-Framework.git

#SHELL ["/bin/bash", "-c", "source activate single_cell"]
WORKDIR /Open-Omics-Acceleration-Framework/lib/tal/applications/UMAP_fast/umap_extend/
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4 changes: 1 addition & 3 deletions pipelines/single-cell-RNA-seq-analysis/Dockerfile.python
Original file line number Diff line number Diff line change
Expand Up @@ -59,9 +59,7 @@ RUN groupadd --gid 1001 $SERVICE_NAME && \

RUN pip uninstall -y umap-learn
WORKDIR /
RUN wget https://github.com/IntelLabs/Open-Omics-Acceleration-Framework/releases/download/2.1/Source_code_with_submodules.tar.gz
RUN tar -xzf Source_code_with_submodules.tar.gz
#RUN git clone --recursive https://github.com/IntelLabs/Open-Omics-Acceleration-Framework.git
RUN git clone --recursive https://github.com/IntelLabs/Open-Omics-Acceleration-Framework.git

#SHELL ["/bin/bash", "-c", "source activate single_cell"]
WORKDIR /Open-Omics-Acceleration-Framework/lib/tal/applications/UMAP_fast/umap_extend/
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