Models hub internal to Main (#749)

* 2023-03-29-icd10cm_resolver_pipeline_en (#44)

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

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Co-authored-by: Ahmetemintek <[email protected]>

* 2023-03-29-oncology_general_pipeline_en (#46)

* Add model 2023-03-29-oncology_general_pipeline_en

* Add model 2023-03-29-oncology_diagnosis_pipeline_en

* Add model 2023-03-29-oncology_biomarker_pipeline_en

* Add model 2023-03-29-icd10_icd9_mapping_en

* Add model 2023-03-29-icd10cm_snomed_mapping_en

* Add model 2023-03-29-icd10cm_umls_mapping_en

* Add model 2023-03-29-icd9_resolver_pipeline_en

* Add model 2023-03-29-icdo_snomed_mapping_en

* Add model 2023-03-29-mesh_umls_mapping_en

* Add model 2023-03-29-rxnorm_ndc_mapping_en

* Add model 2023-03-29-rxnorm_umls_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icdo_mapping_en

* Add model 2023-03-29-oncology_therapy_pipeline_en

* Add model 2023-03-29-snomed_umls_mapping_en

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Co-authored-by: Cabir40 <[email protected]>

* 2023-03-29-icd10cm_resolver_pipeline_en (#45)

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-umls_drug_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <[email protected]>

* Add model 2023-03-30-text_generator_biomedical_biogpt_en (#48)

Co-authored-by: Cabir40 <[email protected]>

* 2023-03-30-summarizer_generic_jsl_en (#49)

* Add model 2023-03-30-summarizer_generic_jsl_en

* Update 2023-03-30-summarizer_generic_jsl_en.md

---------

Co-authored-by: Cabir40 <[email protected]>
Co-authored-by: Cabir C <[email protected]>

* Add model 2023-03-30-summarizer_clinical_jsl_augmented_en (#51)

* Update 2023-03-30-summarizer_generic_jsl_en.md

* Update 2023-03-30-text_generator_biomedical_biogpt_en.md

* Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md

* 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en (#58)

* Add model 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

---------

Co-authored-by: Damla-Gurbaz <[email protected]>
Co-authored-by: Cabir C <[email protected]>
Co-authored-by: Veysel Kocaman <[email protected]>

* 2023-03-30-ner_vop_wip_en (#52)

* Add model 2023-03-30-ner_vop_wip_en

* Update 2023-03-30-ner_vop_wip_en.md

---------

Co-authored-by: mauro-nievoff <[email protected]>
Co-authored-by: Cabir C <[email protected]>

* 2023-03-30-umls_clinical_findings_resolver_pipeline_en (#47)

* Add model 2023-03-30-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-03-30-cvx_resolver_pipeline_en

* Add model 2023-03-30-umls_disease_syndrome_resolver_pipeline_en

* Add model 2023-03-30-umls_major_concepts_resolver_pipeline_en

* Add model 2023-03-30-umls_drug_substance_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_transform_pipeline_en

* Add model 2023-03-31-spellcheck_clinical_pipeline_en

---------

Co-authored-by: Ahmetemintek <[email protected]>

* Add model 2023-04-03-ner_oncology_limited_80p_for_benchmarks_en (#61)

* 2023-04-03-text_generator_biomedical_biogpt_base_en (#60)

* Delete 2023-03-30-text_generator_biomedical_biogpt_en.md

* Update 2023-04-03-text_generator_generic_flan_base_en.md

* Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md

* Update 2023-03-30-summarizer_generic_jsl_en.md

* Add model 2023-04-04-text_generator_generic_flan_t5_large_en (#64)

* 2023-04-07-embeddings_clinical_medium_en (#75)

* Add model 2023-04-07-embeddings_clinical_medium_en

* Update 2023-04-07-embeddings_clinical_medium_en.md

---------

Co-authored-by: Cabir40 <[email protected]>
Co-authored-by: Cabir C <[email protected]>

* Add model 2023-04-07-embeddings_clinical_large_en (#79)

* 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en (#81)

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en

* Add model 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en

* Add model 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en

* added missing md files

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en

* Delete 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

---------

Co-authored-by: hsaglamlar <[email protected]>
Co-authored-by: Cabir ÇELİK <[email protected]>
Co-authored-by: Cabir C <[email protected]>

* 2023-04-10-medication_resolver_pipeline_en (#83)

* Add model 2023-04-10-medication_resolver_pipeline_en

* Add model 2023-04-11-medication_resolver_transform_pipeline_en

---------

Co-authored-by: SKocer <[email protected]>

* 2023-04-11-umls_clinical_findings_resolver_pipeline_en (#89)

* Add model 2023-04-11-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-04-11-umls_drug_substance_resolver_pipeline_en

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Co-authored-by: Cabir40 <[email protected]>

* 2023-04-12-ner_vop_emb_clinical_large_wip_en (#100)

* Add model 2023-04-12-ner_vop_emb_clinical_large_wip_en

* Add model 2023-04-12-ner_vop_emb_clinical_medium_wip_en

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Co-authored-by: mauro-nievoff <[email protected]>

* Add model 2023-04-12-biogpt_chat_jsl_en (#103)

Co-authored-by: Cabir40 <[email protected]>

* 2023-04-12-ner_oncology_emb_clinical_large_en (#101)

* Add model 2023-04-12-ner_oncology_emb_clinical_large_en

* Add model 2023-04-12-ner_oncology_emb_clinical_medium_en

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Co-authored-by: Meryem1425 <[email protected]>

* 2023-04-12-ner_posology_emb_clinical_large_en (#99)

* Add model 2023-04-12-ner_posology_emb_clinical_large_en

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed the given sample text

* Add model 2023-04-12-ner_posology_emb_clinical_medium_en

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Corrected thr code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_large_en

* Update 2023-04-12-ner_deid_large_emb_clinical_large_en.md

Corrected the code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_medium_en

* Update 2023-04-12-ner_deid_large_emb_clinical_medium_en.md

corrected the python code block view

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Fixed scala code

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed scala code

---------

Co-authored-by: gokhanturer <[email protected]>
Co-authored-by: Gökhan <[email protected]>

* 2023-04-12-ner_jsl_emb_clinical_medium_en (#98)

* Add model 2023-04-12-ner_jsl_emb_clinical_medium_en

* Add model 2023-04-12-ner_jsl_emb_clinical_large_en

---------

Co-authored-by: Damla-Gurbaz <[email protected]>

* 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en (#96)

* Add model 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en

* Add model 2023-04-12-ner_sdoh_emb_clinical_large_wip_en

---------

Co-authored-by: hsaglamlar <[email protected]>

* 2023-04-13-ndc_hcpcs_mapper_en (#113)

* Add model 2023-04-13-ndc_hcpcs_mapper_en

* Add model 2023-04-13-hcpcs_ndc_mapper_en

---------

Co-authored-by: Ahmetemintek <[email protected]>

* Add model 2023-04-13-medication_resolver_pipeline_en (#110)

Co-authored-by: Cabir40 <[email protected]>

* Add model 2023-04-17-ner_sdoh_emb_clinical_large_wip_en (#126)

* Add model 2023-04-18-biogpt_chat_jsl_conversational_en (#130)

Co-authored-by: HashamUlHaq <[email protected]>

* 2023-04-20-explain_clinical_doc_medication_en (#140)

* Add model 2023-04-20-explain_clinical_doc_medication_en

* Add model 2023-04-20-explain_clinical_doc_radiology_en

* Add model 2023-04-20-explain_clinical_doc_ade_en

* Add model 2023-04-20-explain_clinical_doc_era_en

* Add model 2023-04-20-explain_clinical_doc_carp_en

---------

Co-authored-by: Cabir40 <[email protected]>

* 2023-04-23-summarizer_jsl_radiology_en (#145)

* Update 2023-04-23-summarizer_jsl_radiology_en.md

* 2023-04-20-ner_vop_anatomy_wip_en (#139)

* 2023-04-26-ner_profiling_biobert_en (#151)

* 2023-04-27-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#168)

* Update 2023-04-23-summarizer_jsl_radiology_en.md

* 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en (#170)

* Add model 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en

* Add model 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en

* Add model 2023-04-28-genericclassifier_sdoh_insurance_coverage_sbiobert_cased_mli_en

* Update 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en.md

* Update 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en.md

---------

Co-authored-by: hsaglamlar <[email protected]>
Co-authored-by: Halil Saglamlar <[email protected]>

* Add model 2023-05-01-bert_token_classifier_ner_jsl_en (#181)

Co-authored-by: Damla-Gurbaz <[email protected]>

* Add model 2023-04-28-icd10cm_resolver_pipeline_en (#174)

Co-authored-by: Meryem1425 <[email protected]>

* 2023-04-28-ner_profiling_biobert_en (#171)

* Add model 2023-04-28-ner_profiling_biobert_en

* Add model 2023-04-28-ner_profiling_clinical_en

---------

Co-authored-by: Cabir40 <[email protected]>

* Add model 2023-05-02-ner_demographic_extended_en (#187)

Co-authored-by: andrei9825 <[email protected]>

* Add model 2023-05-04-classifier_logreg_ade_en (#194)

Co-authored-by: gpirge <[email protected]>

* 2023-05-04-ner_profiling_clinical_en (#196)

* Update 2023-05-04-bert_token_classifier_ner_jsl_en.md

Add benchmark

* fixed typos on 2023-05-04-bert_token_classifier_ner_jsl_en.md

* 2023-05-05-ner_clinical_de (#199)

* 2023-05-04-classifierml_ade_en (#197)

* 2023-05-08-summarizer_clinical_key_facts_en (#201)

* Add model 2023-05-08-summarizer_clinical_key_facts_en

* Update 2023-05-08-summarizer_clinical_key_facts_en.md

changed model name

* Update 2023-05-08-summarizer_clinical_key_facts_en.md

Changed description

---------

Co-authored-by: HashamUlHaq <[email protected]>
Co-authored-by: Damla Gurbaz <[email protected]>

* renamed md file

* 2023-05-09-generic_logreg_classifier_ade_en (#202)

* Add model 2023-05-09-generic_logreg_classifier_ade_en

* Update 2023-05-09-generic_logreg_classifier_ade_en.md

corrected the indentations of the Python codes

* Update 2023-05-09-generic_logreg_classifier_ade_en.md

changed the title

* Add model 2023-05-09-generic_svm_classifier_ade_en

---------

Co-authored-by: gpirge <[email protected]>
Co-authored-by: gursev.pirge <[email protected]>

* Add model 2023-05-08-ner_clinical_de (#200)

Co-authored-by: Ahmetemintek <[email protected]>

* Add model 2023-05-11-biogpt_chat_jsl_conditions_en (#204)

Co-authored-by: HashamUlHaq <[email protected]>

* 2023-05-11-classifier_logreg_ade_en (#209)

* Add model 2023-05-11-classifier_logreg_ade_en

* Add model 2023-05-11-classifierml_ade_en

---------

Co-authored-by: gpirge <[email protected]>

* 2023-05-12-ner_abbreviation_emb_clinical_medium_en (#214)

* Add model 2023-05-12-ner_abbreviation_emb_clinical_medium_en

* Add model 2023-05-12-ner_abbreviation_emb_clinical_large_en

* Update 2023-05-12-ner_abbreviation_emb_clinical_medium_en.md

* Update 2023-05-12-ner_abbreviation_emb_clinical_large_en.md

---------

Co-authored-by: Damla-Gurbaz <[email protected]>
Co-authored-by: Damla Gurbaz <[email protected]>

* 2023-05-11-icd10cm_cause_claim_mapper_en (#210)

* Add model 2023-05-11-icd10cm_cause_claim_mapper_en

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

The provided example is updated based on the review. Additional explanation is added for the case where there is no equivalent claim analysis code.

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

The output results are changed.

---------

Co-authored-by: SKocer <[email protected]>
Co-authored-by: Samed K <[email protected]>
Co-authored-by: muhammetsnts <[email protected]>

* Add model 2023-05-13-spellcheck_drug_norvig_en (#220)

Co-authored-by: Ahmetemintek <[email protected]>

* Update 2023-05-08-summarizer_clinical_guidelines_large_en.md

* 2023-05-15-ner_anatomy_emb_clinical_medium_en (#225)

* Add model 2023-05-15-ner_anatomy_emb_clinical_medium_en

* Add model 2023-05-15-ner_anatomy_emb_clinical_large_en

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

---------

Co-authored-by: gokhanturer <[email protected]>
Co-authored-by: Gökhan <[email protected]>

* 2023-05-15-biogpt_pubmed_qa_en (#227)

* Add model 2023-05-15-biogpt_pubmed_qa_en

* Update 2023-05-15-biogpt_pubmed_qa_en.md

* Add model 2023-05-15-flan_t5_base_jsl_qa_en

* Update 2023-05-15-flan_t5_base_jsl_qa_en.md

---------

Co-authored-by: Cabir40 <[email protected]>
Co-authored-by: Cabir C <[email protected]>

* Add model 2023-05-17-medical_qa_biogpt_en (#234)

Co-authored-by: Cabir40 <[email protected]>

* Update 2023-04-20-explain_clinical_doc_carp_en.md

* Update 2023-04-20-explain_clinical_doc_era_en.md

* Update 2023-04-20-explain_clinical_doc_carp_en.md

* Update 2023-04-28-icd10cm_resolver_pipeline_en.md

* Update 2023-05-08-summarizer_clinical_guidelines_large_en.md

* 2023-05-20-sbiobertresolve_icd10cm_augmented_en (#243)

* Add model 2023-05-20-sbiobertresolve_icd10cm_augmented_en

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

---------

Co-authored-by: Ahmetemintek <[email protected]>
Co-authored-by: muhammetsnts <[email protected]>

* 2023-05-21-ner_ade_emb_clinical_medium_en (#244)

* Add model 2023-05-21-ner_ade_emb_clinical_medium_en

* Add model 2023-05-21-ner_ade_emb_clinical_large_en

* Add model 2023-05-24-ner_cellular_emb_clinical_medium_en

* Add model 2023-05-24-ner_cellular_emb_clinical_large_en

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Co-authored-by: Damla-Gurbaz <[email protected]>

* 2023-05-23-ner_bacterial_species_emb_clinical_medium_en (#252)

* Add model 2023-05-23-ner_bacterial_species_emb_clinical_medium_en

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

* Add model 2023-05-23-ner_bacterial_species_emb_clinical_large_en

* Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

---------

Co-authored-by: gokhanturer <[email protected]>
Co-authored-by: Gökhan <[email protected]>

* 2023-05-19-ner_vop_wip_en (#242)

* Add model 2023-05-19-ner_vop_wip_en

* Add model 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en

* Add model 2023-05-19-ner_vop_wip_embeddings_clinical_large_en

* Add model 2023-05-19-ner_vop_anatomy_wip_en

* Add model 2023-05-19-ner_vop_clinical_dept_wip_en

* Add model 2023-05-19-ner_vop_demographic_wip_en

* Add model 2023-05-19-ner_vop_problem_reduced_wip_en

* Add model 2023-05-19-ner_vop_problem_wip_en

* Add model 2023-05-19-ner_vop_temporal_wip_en

* Add model 2023-05-19-ner_vop_test_wip_en

* Add model 2023-05-19-ner_vop_treatment_wip_en

* Update 2023-05-19-ner_vop_anatomy_wip_en.md

Fixing wrong special character (").

* Update 2023-05-19-ner_vop_treatment_wip_en.md

Fixing special character (" to ').

* Update 2023-05-19-ner_vop_test_wip_en.md

Fixing special character (" to ').

* Update 2023-05-19-ner_vop_temporal_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_problem_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_problem_reduced_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_demographic_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_clinical_dept_wip_en.md

Adding sample text.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Changing model name ner_vop_wip_embeddings_clinical_medium to ner_vop_wip_emb_clinical_medium.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Changing model name ner_vop_wip_embeddings_clinical_large to ner_vop_wip_emb_clinical_large.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Changed s3 link.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Changed s3 link.

* Add model 2023-05-24-bert_sequence_classifier_vop_side_effect_en

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

Minor edit.

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

Minor edit.

---------

Co-authored-by: mauro-nievoff <[email protected]>
Co-authored-by: mauro-nievoff <[email protected]>

* 2023-05-24-sbiobertresolve_icd10cm_generalised_augmented_en (#256)

* 2023-05-29-summarizer_clinical_jsl_pipeline_en (#282)

* 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar (#283)

* Add model 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar

* Update 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar.md

* update md file name

* Add model 2023-05-30-ner_deid_generic_ar

* fixed typos

* fixed typos

---------

Co-authored-by: mellahysf <[email protected]>
Co-authored-by: Cabir C <[email protected]>
Co-authored-by: Cabir ÇELİK <[email protected]>

* 2023-05-29-summarizer_clinical_layman_en (#280)

* Add model 2023-05-29-summarizer_clinical_layman_en

* Update 2023-05-29-summarizer_clinical_layman_en.md

* update model name

* Added English names to the example text

---------

Co-authored-by: dcecchini <[email protected]>
Co-authored-by: Cabir ÇELİK <[email protected]>

* 2023-05-26-icd10cm_billable_hcc_mapper_en (#266)

* Add model 2023-05-26-icd10cm_billable_hcc_mapper_en

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

md file was fixed based on the feedback.

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

---------

Co-authored-by: Ahmetemintek <[email protected]>
Co-authored-by: muhammetsnts <[email protected]>

* 2023-05-16-classifier_logreg_ade_en (#232)

* 2023-05-30-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#299)

* 2023-05-30-icd10cm_mapper_en (#295)

* 2023-05-31-sbiobertresolve_hcc_augmented_en (#304)

* Add model 2023-05-31-sbiobertresolve_hcc_augmented_en

* Update 2023-05-31-sbiobertresolve_hcc_augmented_en.md

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Co-authored-by: Ahmetemintek <[email protected]>

* 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en (#305)

* Add model 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en

* Add model 2023-05-31-summarizer_radiology_pipeline_en

* Add model 2023-05-31-summarizer_clinical_questions_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Delete 2023-05-31-summarizer_biomedical_pubmed_pipeline_en.md

* Add model 2023-05-31-summarizer_generic_jsl_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_augmented_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_pipeline_en

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Co-authored-by: Damla-Gurbaz <[email protected]>
Co-authored-by: Damla Gurbaz <[email protected]>

* 2023-05-31-sbertresolve_icd10cm_slim_billable_hcc_en (#302)

* 2023-05-31-sbertresolve_icd10cm_augmented_en (#306)

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

* 2023-05-31-ner_deid_subentity_pipeline_ar (#313)

* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

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Co-authored-by: mellahysf <[email protected]>

* 2023-05-31-ner_deid_subentity_pipeline_ar (#313)

* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

* Update 2023-05-31-ner_deid_subentity_pipeline_ar.md

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Co-authored-by: mellahysf <[email protected]>
Co-authored-by: Cabir C <[email protected]>

* 2023-06-02-ner_chemicals_emb_clinical_large_en (#327)

* Add model 2023-06-06-ner_deid_generic_pipeline_ar (#351)

* 2023-06-06-ner_vop_en (#350)

* Add model 2023-06-08-ner_demographic_extended_healthcare_en (#359)

Co-authored-by: Cabir40 <[email protected]>

* 2023-06-06-summarizer_clinical_laymen_pipeline_en (#352)

* Add model 2023-06-06-summarizer_clinical_laymen_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-07-bert_token_classifier_ner_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <[email protected]>

* Add model 2023-06-11-ner_profiling_biobert_en (#362)

Co-authored-by: ahmedlone127 <[email protected]>

* 2023-06-09-ner_vop_pipeline_en (#361)

* Add model 2023-06-09-ner_vop_pipeline_en

* Add model 2023-06-09-ner_vop_anatomy_pipeline_en

* Add model 2023-06-10-ner_vop_clinical_dept_pipeline_en

* Add model 2023-06-10-ner_vop_demographic_pipeline_en

* Add model 2023-06-10-ner_vop_problem_pipeline_en

* Add model 2023-06-10-ner_vop_problem_reduced_pipeline_en

* Add model 2023-06-10-ner_vop_temporal_pipeline_en

* Add model 2023-06-10-ner_vop_test_pipeline_en

* Add model 2023-06-10-ner_vop_treatment_pipeline_en

---------

Co-authored-by: mauro-nievoff <[email protected]>

* Add model 2023-06-13-ner_sdoh_en (#370)

Co-authored-by: hsaglamlar <[email protected]>

* Add model 2023-06-13-icd10cm_umls_mapping_en (#373)

Co-authored-by: C-K-Loan <[email protected]>

* 2023-06-13-ner_profiling_biobert_en (#368)

* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-explain_clinical_doc_carp_en

* Add model 2023-06-13-explain_clinical_doc_era_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-explain_clinical_doc_medication_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-oncology_general_pipeline_en

* Add model 2023-06-13-oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-13-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-13-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_posology_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-13-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-13-ner_clinical_bert_pipeline_ro

* Add model 2023-06-13-ner_clinical_pipeline_ro

* Add model 2023-06-13-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-ner_covid_trials_pipeline_en

* Add model 2023-06-13-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_generic_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_pipeline_ro

* Add model 2023-06-13-ner_living_species_300_pipeline_es

* Add model 2023-06-13-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-13-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_oncology_demographics_pipeline_en

* Add model 2023-06-13-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-13-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-13-ner_oncology_test_pipeline_en

* Add model 2023-06-13-ner_oncology_therapy_pipeline_en

* Add model 2023-06-13-ner_oncology_tnm_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-13-ner_pharmacology_pipeline_es

* Add model 2023-06-13-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-13-ner_deid_generic_pipeline_it

* Add model 2023-06-13-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_it

* Add model 2023-06-13-ner_deid_synthetic_pipeline_en

* Add model 2023-06-13-ner_living_species_bert_pipeline_es

* Add model 2023-06-13-ner_living_species_bert_pipeline_fr

* Add model 2023-06-13-ner_living_species_bert_pipeline_it

* Add model 2023-06-13-ner_living_species_bert_pipeline_pt

* Add model 2023-06-13-ner_living_species_bert_pipeline_ro

* Add model 2023-06-13-ner_living_species_pipeline_ca

* Add model 2023-06-13-ner_living_species_pipeline_en

* Add model 2023-06-13-ner_living_species_pipeline_es

* Add model 2023-06-13-ner_living_species_pipeline_fr

* Add model 2023-06-13-ner_living_species_pipeline_gl

* Add model 2023-06-13-ner_living_species_pipeline_it

* Add model 2023-06-13-ner_living_species_pipeline_pt

* Add model 2023-06-13-ner_living_species_roberta_pipeline_es

* Add model 2023-06-13-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-13-ner_chemd_clinical_pipeline_en

* Add model 2023-06-13-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-13-ner_supplement_clinical_pipeline_en

* Add model 2023-06-13-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-13-ner_diag_proc_pipeline_es

* Add model 2023-06-13-ner_healthcare_pipeline_de

* Add model 2023-06-13-ner_healthcare_slim_pipeline_de

* Add model 2023-06-13-ner_neoplasms_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-13-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-13-ner_living_species_biobert_pipeline_en

* Add model 2023-06-13-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-13-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_ncbi_disease_pipeline_en

---------

Co-authored-by: ahmedlone127 <[email protected]>

* 2023-06-13-ner_profiling_biobert_en (#375)

* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: C-K-Loan <[email protected]>

* 2023-06-13-bert_sequence_classifier_vop_drug_side_effect_en (#376)

* Add model 2023-06-14-clinical_deidentification_ar (#382)

* 2023-06-13-recognize_entities_posology_en (#378)

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: Cabir40 <[email protected]>

* 2023-06-13-bert_sequence_classifier_vop_side_effect_pipeline_en (#380)

* Add model 2023-06-15-ner_profiling_biobert_en (#397)

Co-authored-by: ahmedlone127 <[email protected]>

* Add model 2023-06-16-ner_profiling_biobert_en (#399)

Co-authored-by: ahmedlone127 <[email protected]>

* Add model 2023-06-16-ner_profiling_biobert_en (#400)

Co-authored-by: Cabir40 <[email protected]>

* 2023-06-16-ner_profiling_biobert_en (#401)

* Add model 2023-06-16-ner_profiling_biobert_en

* Add model 2023-06-16-clinical_deidentification_en

* Add model 2023-06-16-explain_clinical_doc_carp_en

* Add model 2023-06-16-explain_clinical_doc_era_en

* Add model 2023-06-16-recognize_entities_posology_en

* Add model 2023-06-16-explain_clinical_doc_ade_en

* Add model 2023-06-16-snomed_icd10cm_mapping_en

* Add model 2023-06-16-snomed_umls_mapping_en

* Add model 2023-06-16-mesh_umls_mapping_en

* Add model 2023-06-16-clinical_deidentification_de

* Add model 2023-06-16-clinical_deidentification_es

* Add model 2023-06-16-rxnorm_umls_mapping_en

* Add model 2023-06-16-rxnorm_mesh_mapping_en

* Add model 2023-06-16-icd10_icd9_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_cellular_pipeline_en

* Add model 2023-06-16-icd10cm_umls_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_chemprot_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatomy_pipeline_en

---------

Co-authored-by: ahmedlone127 <[email protected]>

* 2023-06-16-clinical_deidentification_fr (#403)

* Add model 2023-06-16-clinical_deidentification_fr

* Add model 2023-06-16-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_slim_pipeline_en

* Add model 2023-06-16-clinical_deidentification_augmented_es

* Add model 2023-06-16-bert_token_classifier_ner_deid_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_drugs_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_modifier_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bionlp_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_ade_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_en

* Add model 2023-06-16-ner_abbreviation_clinical_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_ade_biobert_pipeline_en

* Add model 2023-06-16-ner_ade_clinical_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinicalbert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_pipeline_en

* Add model 2023-06-16-ner_anatomy_pipeline_en

* Add model 2023-06-16-ner_bacterial_species_pipeline_en

* Add model 2023-06-16-ner_biomarker_pipeline_en

* Add model 2023-06-16-ner_bionlp_biobert_pipeline_en

* Add model 2023-06-16-ner_bionlp_pipeline_en

* Add model 2023-06-16-ner_cancer_genetics_pipeline_en

* Add model 2023-06-16-ner_cellular_biobert_pipeline_en

* Add model 2023-06-16-ner_cellular_pipeline_en

* Add model 2023-06-16-ner_chemicals_pipeline_en

* Add model 2023-06-16-ner_chemprot_biobert_pipeline_en

* Add model 2023-06-16-ner_chemprot_clinical_pipeline_en

* Add model 2023-06-16-ner_chexpert_pipeline_en

* Add model 2023-06-16-ner_clinical_biobert_pipeline_en

* Add model 2023-06-16-ner_clinical_large_pipeline_en

* Add model 2023-06-16-ner_clinical_pipeline_en

* Add model 2023-06-16-ner_deid_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_pipeline_en

* Add model 2023-06-16-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_de

* Add model 2023-06-16-ner_deid_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_i2b2_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_de

* Add model 2023-06-16-ner_deidentify_dl_pipeline_en

* Add model 2023-06-16-ner_diseases_biobert_pipeline_en

* Add model 2023-06-16-ner_diseases_large_pipeline_en

* Add model 2023-06-16-ner_diseases_pipeline_en

* Add model 2023-06-16-ner_drugprot_clinical_pipeline_en

* Add model 2023-06-16-ner_drugs_greedy_pipeline_en

* Add model 2023-06-16-ner_drugs_large_pipeline_en

* Add model 2023-06-16-ner_drugs_pipeline_en

* Add model 2023-06-16-ner_events_admission_clinical_pipeline_en

* Add model 2023-06-16-ner_events_biobert_pipeline_en

* Add model 2023-06-16-ner_events_clinical_pipeline_en

* Add model 2023-06-16-ner_genetic_variants_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_clinical_pipeline_en

* Add model 2023-06-16-ner_jsl_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_pipeline_en

* Add model 2023-06-16-ner_jsl_pipeline_en

* Add model 2023-06-16-ner_jsl_slim_pipeline_en

* Add model 2023-06-16-ner_measurements_clinical_pipeline_en

* Add model 2023-06-16-ner_medmentions_coarse_pipeline_en

* Add model 2023-06-16-ner_nihss_pipeline_en

* Add model 2023-06-16-ner_posology_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_experimental_pipeline_en

* Add model 2023-06-16-ner_posology_greedy_pipeline_en

* Add model 2023-06-16-ner_posology_large_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_large_pipeline_en

* Add model 2023-06-16-ner_posology_pipeline_en

* Add model 2023-06-16-ner_posology_small_pipeline_en

* Add model 2023-06-16-ner_radiology_pipeline_en

* Add model 2023-06-16-ner_radiology_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_risk_factors_biobert_pipeline_en

* Add model 2023-06-16-ner_risk_factors_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_augmented_en

* Add model 2023-06-16-ner_events_healthcare_pipeline_en

* Add model 2023-06-16-ner_ade_healthcare_pipeline_en

* Add model 2023-06-16-ner_healthcare_pipeline_en

* Add model 2023-06-16-ner_posology_healthcare_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-16-bert_token_classifier_drug_development_trials_pipeline_en

* Add model 2023-06-16-clinical_deidentification_it

* Add model 2023-06-16-explain_clinical_doc_radiology_en

* Add model 2023-06-16-re_bodypart_directions_pipeline_en

* Add model 2023-06-16-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-16-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-16-re_test_problem_finding_pipeline_en

* Add model 2023-06-16-re_test_result_date_pipeline_en

* Add model 2023-06-16-explain_clinical_doc_medication_en

* Add model 2023-06-16-spellcheck_clinical_pipeline_en

* Add model 2023-06-16-clinical_deidentification_pt

* Add model 2023-06-16-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-16-ner_biomedical_bc2gm_pipeline_en

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-icd10cm_snomed_mapping_en

* Add model 2023-06-16-icdo_snomed_mapping_en

* Add model 2023-06-16-rxnorm_ndc_mapping_en

* Add model 2023-06-16-clinical_deidentification_ro

* Add model 2023-06-16-snomed_icdo_mapping_en

* Add model 2023-06-16-ner_pathogen_pipeline_en

* Add model 2023-06-16-clinical_deidentification_wip_en

* Add model 2023-06-16-clinical_deidentification_slim_en

* Add model 2023-06-16-ner_medication_pipeline_en

* Add model 2023-06-16-oncology_general_pipeline_en

* Add model 2023-06-16-oncology_biomarker_pipeline_en

* Add model 2023-06-16-oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-16-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-16-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_posology_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-16-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-16-ner_clinical_bert_pipeline_ro

* Add model 2023-06-16-ner_clinical_pipeline_ro

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-ner_covid_trials_pipeline_en

* Add model 2023-06-16-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_generic_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_pipeline_ro

* Add model 2023-06-16-ner_living_species_300_pipeline_es

* Add model 2023-06-16-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-16-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-16-ner_oncology_demographics_pipeline_en

* Add model 2023-06-16-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-16-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-16-ner_oncology_test_pipeline_en

* Add model 2023-06-16-ner_oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_oncology_tnm_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-16-ner_pharmacology_pipeline_es

* Add model 2023-06-16-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_it

* Add model 2023-06-16-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_it

* Add model 2023-06-16-ner_deid_synthetic_pipeline_en

* Add model 2023-06-16-ner_living_species_bert_pipeline_es

* Add model 2023-06-16-ner_living_species_bert_pipeline_fr

* Add model 2023-06-16-ner_living_species_bert_pipeline_it

* Add model 2023-06-16-ner_living_species_bert_pipeline_pt

* Add model 2023-06-16-ner_living_species_bert_pipeline_ro

* Add model 2023-06-16-ner_living_species_pipeline_ca

* Add model 2023-06-16-ner_living_species_pipeline_en

* Add model 2023-06-16-ner_living_species_pipeline_es

* Add model 2023-06-16-ner_living_species_pipeline_fr

* Add model 2023-06-16-ner_living_species_pipeline_gl

* Add model 2023-06-16-ner_living_species_pipeline_it

* Add model 2023-06-16-ner_living_species_pipeline_pt

* Add model 2023-06-16-ner_living_species_roberta_pipeline_es

* Add model 2023-06-16-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-16-ner_chemd_clinical_pipeline_en

* Add model 2023-06-16-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-16-ner_supplement_clinical_pipeline_en

* Add model 2023-06-16-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-16-ner_diag_proc_pipeline_es

* Add model 2023-06-16-ner_healthcare_pipeline_de

* Add model 2023-06-16-ner_healthcare_slim_pipeline_de

* Add model 2023-06-16-ner_neoplasms_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-16-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-16-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-16-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-16-ner_living_species_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_ar

* Add model 2023-06-16-ner_deid_generic_pipeline_ar

---------

Co-authored-by: ahmedlone127 <[email protected]>

* 2023-06-16-ner_profiling_biobert_en (#406)

* Add model 2023-06-16-ner_profiling_biobert_en

* Add model 2023-06-16-clinical_deidentification_en

* Add model 2023-06-16-explain_clinical_doc_carp_en

* Add model 2023-06-16-explain_clinical_doc_era_en

* Add model 2023-06-16-recognize_entities_posology_en

* Add model 2023-06-16-explain_clinical_doc_ade_en

* Add model 2023-06-16-snomed_icd10cm_mapping_en

* Add model 2023-06-16-icd10_icd9_mapping_en

* Add model 2023-06-16-mesh_umls_mapping_en

* Add model 2023-06-16-icd10cm_umls_mapping_en

* Add model 2023-06-16-clinical_deidentification_glove_en

* Add model 2023-06-16-clinical_deidentification_augmented_es

* Add model 2023-06-16-clinical_deidentification_es

* Add model 2023-06-16-clinical_deidentification_fr

* Add model 2023-06-16-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_chemprot_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_ade_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bionlp_pipeline_en

* Add model 2023-06-16-snomed_umls_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_slim_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_deid_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_cellular_pipeline_en

* Add model 2023-06-16-clinical_deidentification_de

* Add model 2023-06-16-jsl_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-rxnorm_mesh_mapping_en

* Add model 2023-06-16-jsl_ner_wip_modifier_clinical_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_drugs_pipeline_en

* Add model 2023-06-16-rxnorm_umls_mapping_en

* Add model 2023-06-16-ner_abbreviation_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatomy_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_biobert_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinicalbert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_pipeline_en

* Add model 2023-06-16-ner_bacterial_species_pipeline_en

* Add model 2023-06-16-ner_biomarker_pipeline_en

* Add model 2023-06-16-ner_bionlp_biobert_pipeline_en

* Add model 2023-06-16-ner_bionlp_pipeline_en

* Add model 2023-06-16-ner_cancer_genetics_pipeline_en

* Add model 2023-06-16-ner_cellular_biobert_pipeline_en

* Add model 2023-06-16-ner_cellular_pipeline_en

* Add model 2023-06-16-ner_chemicals_pipeline_en

* Add model 2023-06-16-ner_chemprot_biobert_pipeline_en

* Add model 2023-06-16-ner_chemprot_clinical_pipeline_en

* Add model 2023-06-16-ner_chexpert_pipeline_en

* Add model 2023-06-16-ner_clinical_biobert_pipeline_en

* Add model 2023-06-16-ner_clinical_large_pipeline_en

* Add model 2023-06-16-ner_clinical_pipeline_en

* Add model 2023-06-16-ner_deid_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_pipeline_en

* Add model 2023-06-16-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_de

* Add model 2023-06-16-ner_deid_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_i2b2_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_de

* Add model 2023-06-16-ner_deidentify_dl_pipeline_en

* Add model 2023-06-16-ner_diseases_biobert_pipeline_en

* Add model 2023-06-16-ner_diseases_large_pipeline_en

* Add model 2023-06-16-ner_diseases_pipeline_en

* Add model 2023-06-16-ner_drugprot_clinical_pipeline_en

* Add model 2023-06-16-ner_drugs_greedy_pipeline_en

* Add model 2023-06-16-ner_drugs_large_pipeline_en

* Add model 2023-06-16-ner_drugs_pipeline_en

* Add model 2023-06-16-ner_events_admission_clinical_pipeline_en

* Add model 2023-06-16-ner_events_biobert_pipeline_en

* Add model 2023-06-16-ner_events_clinical_pipeline_en

* Add model 2023-06-16-ner_genetic_variants_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_clinical_pipeline_en

* Add model 2023-06-16-ner_jsl_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_pipeline_en

* Add model 2023-06-16-ner_jsl_pipeline_en

* Add model 2023-06-16-ner_jsl_slim_pipeline_en

* Add model 2023-06-16-ner_measurements_clinical_pipeline_en

* Add model 2023-06-16-ner_medmentions_coarse_pipeline_en

* Add model 2023-06-16-ner_nihss_pipeline_en

* Add model 2023-06-16-ner_posology_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_experimental_pipeline_en

* Add model 2023-06-16-ner_posology_greedy_pipeline_en

* Add model 2023-06-16-ner_posology_large_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_large_pipeline_en

* Add model 2023-06-16-ner_posology_pipeline_en

* Add model 2023-06-16-ner_posology_small_pipeline_en

* Add model 2023-06-16-ner_radiology_pipeline_en

* Add model 2023-06-16-ner_radiology_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_risk_factors_biobert_pipeline_en

* Add model 2023-06-16-ner_risk_factors_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_augmented_en

* Add model 2023-06-16-ner_ade_healthcare_pipeline_en

* Add model 2023-06-16-ner_healthcare_pipeline_en

* Add model 2023-06-16-ner_posology_healthcare_pipeline_en

* Add model 2023-06-16-bert_token_classifier_drug_development_trials_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-16-ner_events_healthcare_pipeline_en

* Add model 2023-06-16-clinical_deidentification_it

* Add model 2023-06-16-explain_clinical_doc_radiology_en

* Add model 2023-06-16-re_bodypart_directions_pipeline_en

* Add model 2023-06-16-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-16-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-16-re_test_problem_finding_pipeline_en

* Add model 2023-06-16-re_test_result_date_pipeline_en

* Add model 2023-06-16-explain_clinical_doc_medication_en

* Add model 2023-06-16-spellcheck_clinical_pipeline_en

* Add model 2023-06-16-clinical_deidentification_pt

* Add model 2023-06-16-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-16-ner_biomedical_bc2gm_pipeline_en

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-icd10cm_snomed_mapping_en

* Add model 2023-06-16-icdo_snomed_mapping_en

* Add model 2023-06-16-rxnorm_ndc_mapping_en

* Add model 2023-06-16-clinical_deidentification_ro

* Add model 2023-06-16-snomed_icdo_mapping_en

* Add model 2023-06-16-ner_pathogen_pipeline_en

* Add model 2023-06-16-clinical_deidentification_wip_en

* Add model 2023-06-16-clinical_deidentification_slim_en

* Add model 2023-06-16-ner_medication_pipeline_en

* Add model 2023-06-16-oncology_general_pipeline_en

* Add model 2023-06-16-oncology_biomarker_pipeline_en

* Add model 2023-06-16-oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-16-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-16-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_posology_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-16-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-16-ner_clinical_bert_pipeline_ro

* Add model 2023-06-16-ner_clinical_pipeline_ro

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-ner_covid_trials_pipeline_en

* Add model 2023-06-16-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_generic_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_pipeline_ro

* Add model 2023-06-16-ner_living_species_300_pipeline_es

* Add model 2023-06-16-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-16-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-16-ner_oncology_demographics_pipeline_en

* Add model 2023-06-16-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-16-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-16-ner_oncology_test_pipeline_en

* Add model 2023-06-16-ner_oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_oncology_tnm_pipeline_en

* Add model 2023-06-17-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-17-ner_pharmacology_pipeline_es

* Add model 2023-06-17-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-17-ner_deid_generic_pipeline_it

* Add model 2023-06-17-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-17-ner_deid_subentity_pipeline_it

* Add model 2023-06-17-ner_deid_synthetic_pipeline_en

* Add model 2023-06-17-ner_living_species_bert_pipeline_es

* Add model 2023-06-17-ner_living_species_bert_pipeline_fr

* Add model 2023-06-17-ner_living_species_bert_pipeline_pt

* Add model 2023-06-17-ner_living_species_bert_pipeline_ro

* Add model 2023-06-17-ner_living_species_bert_pipeline_it

* Add model 2023-06-17-ner_living_species_pipeline_ca

* Add model 2023-06-17-ner_living_species_pipeline_en

* Add model 2023-06-17-ner_living_species_pipeline_es

* Add model 2023-06-17-ner_living_species_pipeline_fr

* Add model 2023-06-17-ner_living_species_pipeline_gl

* Add model 2023-06-17-ner_living_species_pipeline_it

* Add model 2023-06-17-ner_living_species_pipeline_pt

* Add model 2023-06-17-ner_living_species_roberta_pipeline_es

* Add model 2023-06-17-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-17-ner_chemd_clinical_pipeline_en

* Add model 2023-06-17-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-17-ner_supplement_clinical_pipeline_en

* Add model 2023-06-17-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-17-ner_diag_proc_pipeline_es

* Add model 2023-06-17-ner_healthcare_pipeline_de

* Add model 2023-06-17-ner_healthcare_slim_pipeline_de

* Add model 2023-06-17-ner_neoplasms_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-17-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-17-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-17-ner_deid_generic_pipeline_ar

* Add model 2023-06-17-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-17-ner_deid_subentity_pipeline_ar

* Add model 2023-06-17-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-17-ner_living_species_biobert_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-17-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-17-ner_living_species_biobert_pipeline_en

* Add model 2023-06-17-ner_deid_generic_pipeline_ar

* Add model 2023-06-17-ner_deid_subentity_pipeline_ar

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_es

---------

Co-authored-by: Cabir40 <[email protected]>

* 2023-06-17-ner_profiling_biobert_en (#408)

* Add model 2023-06-17-ner_profiling_biobert_en

* Add model 2023-06-17-clinical_deidentification_en

* Add model 2023-06-17-explain_clinical_doc_carp_en

* Add model 2023-06-17-explain_clinical_doc_era_en

* Add model 2023-06-17-recognize_entities_posology_en

* Add model 2023-06-17-snomed_icd10cm_mapping_en

* Add model 2023-06-17-clinical_deidentification_glove_en

* Add model 2023-06-17-icd10cm_umls_mapping_en

* Add model 2023-06-17-icd10_icd9_mapping_en

* Add model 2023-06-17-mesh_umls_mapping_en

* Add model 2023-06-17-clinical_deidentification_es

* Add model 2023-06-17-rxnorm_mesh_mapping_en

* Add model 2023-06-17-clinical_deidentification_augmented_es

* Add model 2023-06-17-clinical_deidentification_fr

* Add model 2023-06-17-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_anatomy_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-17-explain_clinical_doc_ade_en

* Add model 2023-06-17-clinical_deidentification_de

* Add model 2023-06-17-bert_token_classifier_ner_cellular_pipeline_en

* …

docs/_posts/Cabir40/2023-10-03-multiclassifierdl_respiratory_disease_en.md

@@ -84,7 +84,6 @@ data = spark.createDataFrame([
         ["""The patient was on Metformin for DM2, mood stabilizers for Bipolar II Disorder, and inhaled corticosteroids for Asthma."""],
         ["""The patient was diagnosed with Chronic Bronchitis after a series of pulmonary function tests."""],
         ["""Chest CT imaging revealed significant bullae and airspace enlargement, consistent with a diagnosis of emphysema."""],
-
     ]).toDF("text")
 
 
@@ -188,6 +187,6 @@ COPD                 267   27	   52	   0.90816325	 0.8369906	 0.8711256
 No                   55	   8	   19	   0.8730159	 0.7432432	 0.8029197
 Chronic bronchitis   241   27	   25	   0.8992537	 0.90601504	 0.9026217
 Asthma               104   15	   25	   0.8739496	 0.8062016	 0.83870965
-Macro-average        823   110     193     0.83017427    0.7265169   0.7748944
-Micro-average        823   110     193     0.88210076    0.8100393   0.84453565
-```
+Macro-average        823   110   193   0.83017427  0.7265169   0.7748944
+Micro-average        823   110   193   0.88210076  0.8100393   0.84453565
+```

docs/_posts/Cabir40/2023-10-16-multiclassifierdl_heart_disease_en.md

@@ -177,4 +177,4 @@ Hypertension  184    30    41    0.8598131      0.8177778    0.8382688
 CAD           191    13    14    0.9362745      0.9317073    0.9339853
 Macro-average 917    105   136   0.8870357      0.8389225    0.8623085
 Micro-average 917    105   136   0.89726025     0.8708452    0.88385534
-```
+```

docs/_posts/Cabir40/2023-10-16-multiclassifierdl_mental_disorder_en.md

@@ -35,6 +35,7 @@ The Mental Disorder Classifier Model is a specialized text classification system
 
 `Anxiety Disorder`, `Bipolar disorder`, `No`, `Schizophrenia`, `Depression`, `Other/Unknown`
 
+
 {:.btn-box}
 [Live Demo](https://demo.johnsnowlabs.com/healthcare/CLASSIFICATION_MENTAL_DISORDER/){:.button.button-orange}
 [Open in Colab](https://colab.research.google.com/github/JohnSnowLabs/spark-nlp-workshop/blob/master/tutorials/streamlit_notebooks/healthcare/MENTAL_HEALTH.ipynb){:.button.button-orange.button-orange-trans.co.button-icon}
@@ -133,7 +134,7 @@ val data = Seq(Array(
     """Commenced CBT to equip the patient with coping strategies for persistent irrational fears and nervousness stemming from their anxiety disorder.""",
     """Michael Anderson takes medications for schizophrenia, hypertension, hyperlipidemia, and migraines.""",
     """With a clinical presentation of persistent wheezing and respiratory discomfort, the patient has been conclusively diagnosed with Asthma, necessitating immediate commencement of anti-inflammatory medications.""",
-    )).toDS.toDF("text")
+)).toDS.toDF("text")
 
 val result = clf_pipeline.fit(data).transform(data)
 
@@ -204,4 +205,4 @@ Bipolar_disorder   101  5       10    0.9528302    0.9099099    0.9308756
 Schizophrenia      66   4       23    0.94285715   0.74157304   0.8301887
 Macro-average      750  73     119    0.89897865   0.8252565    0.8605415
 Micro-average      750  73     119    0.9113001    0.863061     0.886524
-```
+```

docs/_posts/ahmet-mesut/2023-11-05-date_of_birth_parser_en.md

@@ -0,0 +1,163 @@
+---
+layout: model
+title: Date of Brith Contextual Parser Model
+author: John Snow Labs
+name: date_of_birth_parser
+date: 2023-11-05
+tags: [en, licensed, contextual_parser, date_of_birth, dob, clinical]
+task: Contextual Parser
+language: en
+edition: Healthcare NLP 5.0.2
+spark_version: 3.0
+supported: true
+annotator: ContextualParserModel
+article_header:
+  type: cover
+use_language_switcher: "Python-Scala-Java"
+---
+
+## Description
+
+This model is a `ContextualParserModel` that can extract date-of-birth (DOB) entities in clinical texts.
+
+## Predicted Entities
+
+`DOB`
+
+{:.btn-box}
+<button class="button button-orange" disabled>Live Demo</button>
+<button class="button button-orange" disabled>Open in Colab</button>
+[Download](https://s3.amazonaws.com/auxdata.johnsnowlabs.com/clinical/models/date_of_birth_parser_en_5.0.2_3.0_1699191960551.zip){:.button.button-orange.button-orange-trans.arr.button-icon.hidden}
+[Copy S3 URI](s3://auxdata.johnsnowlabs.com/clinical/models/date_of_birth_parser_en_5.0.2_3.0_1699191960551.zip){:.button.button-orange.button-orange-trans.button-icon.button-copy-s3}
+
+## How to use
+
+
+
+<div class="tabs-box" markdown="1">
+{% include programmingLanguageSelectScalaPythonNLU.html %}
+
+```python
+document_assembler = DocumentAssembler() \
+    .setInputCol("text") \
+    .setOutputCol("document")
+
+sentence_detector = SentenceDetectorDLModel.pretrained("sentence_detector_dl_healthcare","en","clinical/models")\
+    .setInputCols(["document"])\
+    .setOutputCol("sentence")
+
+tokenizer = Tokenizer() \
+    .setInputCols(["sentence"]) \
+    .setOutputCol("token")
+
+dob_contextual_parser = ContextualParserModel.pretrained("date_of_birth_parser", "en", "clinical/models") \
+    .setInputCols(["sentence", "token"]) \
+    .setOutputCol("chunk_dob") 
+
+chunk_converter = ChunkConverter() \
+    .setInputCols(["chunk_dob"]) \
+    .setOutputCol("ner_chunk")
+
+parserPipeline = Pipeline(stages=[
+        document_assembler,
+        sentence_detector,
+        tokenizer,
+        dob_contextual_parser,
+    chunk_converter
+        ])
+
+model = parserPipeline.fit(spark.createDataFrame([[""]]).toDF("text"))
+
+sample_text = """
+Record date : 2081-01-04
+DB : 11.04.1962
+DT : 12-03-1978
+DOD : 10.25.23
+
+SOCIAL HISTORY:
+She was born on Nov 04, 1962 in London and got married on 04/05/1979. When she got pregnant on 15 May 1079, the doctor wanted to verify her DOB was November 4, 1962. Her date of birth was confirmed to be 11-04-1962, the patient is 45 years old on 25 Sep 2007.
+
+PROCEDURES:
+Patient was evaluated on 1988-03-15 for allergies. She was seen by the endocrinology service and she was discharged on 9/23/1988.
+
+MEDICATIONS
+1. Coumadin 1 mg daily. Last INR was on August 14, 2007, and her INR was 2.3."""
+
+result = model.transform(spark.createDataFrame([[sample_text]]).toDF("text"))
+```
+```scala
+val document_assembler = new DocumentAssembler() 
+    .setInputCol("text") 
+    .setOutputCol("document")
+
+val sentence_detector = SentenceDetectorDLModel.pretrained("sentence_detector_dl_healthcare","en","clinical/models")
+    .setInputCols("document")
+    .setOutputCol("sentence")
+
+val tokenizer = new Tokenizer() 
+    .setInputCols("sentence") 
+    .setOutputCol("token")
+
+val dob_contextual_parser = ContextualParserModel.pretrained("date_of_birth_parser", "en", "clinical/models") 
+    .setInputCols(Array("sentence", "token")) 
+    .setOutputCol("chunk_dob") 
+
+val chunk_converter = new ChunkConverter() 
+    .setInputCols(Array("chunk_dob")) 
+    .setOutputCol("ner_chunk")
+
+val parserPipeline = new Pipeline().setStages(Array(
+        document_assembler,
+        sentence_detector,
+        tokenizer,
+        dob_contextual_parser,
+        chunk_converter
+        ))
+
+val data = Seq(Array("""
+Record date : 2081-01-04 
+DB : 11.04.1962
+DT : 12-03-1978 
+DOD : 10.25.23 
+
+SOCIAL HISTORY:
+She was born on Nov 04, 1962 in London and got married on 04/05/1979. When she got pregnant on 15 May 1079, the doctor wanted to verify her DOB was November 4, 1962. Her date of birth was confirmed to be 11-04-1962, the patient is 45 years old on 25 Sep 2007.
+
+PROCEDURES:
+Patient was evaluated on 1988-03-15 for allergies. She was seen by the endocrinology service and she was discharged on 9/23/1988. 
+
+MEDICATIONS
+1. Coumadin 1 mg daily. Last INR was on August 14, 2007, and her INR was 2.3."""
+)).toDS.toDF("text")
+
+val result = parserPipeline.fit(data).transform(data)
+```
+</div>
+
+## Results
+
+```bash
++-----------+----------------+-----+---+---------+
+|sentence_id|chunk           |begin|end|ner_label|
++-----------+----------------+-----+---+---------+
+|1          |11.04.1962      |31   |40 |DOB      |
+|3          |Nov 04, 1962    |107  |118|DOB      |
+|4          |November 4, 1962|239  |254|DOB      |
+|5          |11-04-1962      |295  |304|DOB      |
++-----------+----------------+-----+---+---------+
+```
+
+{:.model-param}
+## Model Information
+
+{:.table-model}
+|---|---|
+|Model Name:|date_of_birth_parser|
+|Compatibility:|Healthcare NLP 5.0.2+|
+|License:|Licensed|
+|Edition:|Official|
+|Input Labels:|[sentence, token]|
+|Output Labels:|[chunk_dob]|
+|Language:|en|
+|Size:|4.9 KB|
+|Case sensitive:|false|

docs/_posts/ahmet-mesut/2023-11-05-date_of_death_parser_en.md

@@ -0,0 +1,166 @@
+---
+layout: model
+title: Date of Death Contextual Parser Model
+author: John Snow Labs
+name: date_of_death_parser
+date: 2023-11-05
+tags: [en, clinical, date_of_death, contextual_parser, dod, licensed]
+task: Contextual Parser
+language: en
+edition: Healthcare NLP 5.1.2
+spark_version: 3.0
+supported: true
+annotator: ContextualParserModel
+article_header:
+  type: cover
+use_language_switcher: "Python-Scala-Java"
+---
+
+## Description
+
+This model is a `ContextualParserModel` that can extract date-of-death (DOD) entities in clinical texts.
+
+## Predicted Entities
+
+`DOD`
+
+{:.btn-box}
+<button class="button button-orange" disabled>Live Demo</button>
+<button class="button button-orange" disabled>Open in Colab</button>
+[Download](https://s3.amazonaws.com/auxdata.johnsnowlabs.com/clinical/models/date_of_death_parser_en_5.1.2_3.0_1699192712408.zip){:.button.button-orange.button-orange-trans.arr.button-icon.hidden}
+[Copy S3 URI](s3://auxdata.johnsnowlabs.com/clinical/models/date_of_death_parser_en_5.1.2_3.0_1699192712408.zip){:.button.button-orange.button-orange-trans.button-icon.button-copy-s3}
+
+## How to use
+
+
+
+<div class="tabs-box" markdown="1">
+{% include programmingLanguageSelectScalaPythonNLU.html %}
+
+```python
+document_assembler = DocumentAssembler() \
+    .setInputCol("text") \
+    .setOutputCol("document")
+
+sentence_detector = SentenceDetectorDLModel.pretrained("sentence_detector_dl_healthcare","en","clinical/models")\
+    .setInputCols(["document"])\
+    .setOutputCol("sentence")
+
+tokenizer = Tokenizer() \
+    .setInputCols(["sentence"]) \
+    .setOutputCol("token")
+
+dod_contextual_parser = ContextualParserModel.pretrained("date_of_death_parser", "en", "clinical/models") \
+    .setInputCols(["sentence", "token"]) \
+    .setOutputCol("chunk_dod") 
+
+chunk_converter = ChunkConverter() \
+    .setInputCols(["chunk_dod"]) \
+    .setOutputCol("ner_chunk")
+
+parserPipeline = Pipeline(stages=[
+        document_assembler,
+        sentence_detector,
+        tokenizer,
+        dod_contextual_parser,
+        chunk_converter
+        ])
+
+model = parserPipeline.fit(spark.createDataFrame([[""]]).toDF("text"))
+
+sample_text = """
+Record date : 2081-01-04
+DB : 11.04.1962
+DT : 12-03-1978
+DOD : 10.25.23
+
+SOCIAL HISTORY:
+Jane Doe was born on November 4, 1962, in London, and she got married on April 5, 1979.
+When she got pregnant on May 15, 1979, the doctor wanted to verify her date of birth, which was confirmed to be November 4, 1962.
+Jane was 45 years old when she sadly passed away on September 25, 2007.
+
+PROCEDURES:
+Patient Jane Doe was evaluated on March 15, 1988, for allergies. She was seen by the endocrinology service and was discharged on September 23, 1988.
+
+MEDICATIONS:
+1. Coumadin 1 mg daily. Jane's last INR was measured on August 14, 2007, and it was 2.3."""
+
+result = model.transform(spark.createDataFrame([[sample_text]]).toDF("text"))
+
+```
+```scala
+val document_assembler = new DocumentAssembler() 
+    .setInputCol("text") 
+    .setOutputCol("document")
+
+val sentence_detector = SentenceDetectorDLModel.pretrained("sentence_detector_dl_healthcare","en","clinical/models")
+    .setInputCols("document")
+    .setOutputCol("sentence")
+
+val tokenizer = new Tokenizer() 
+    .setInputCols("sentence") 
+    .setOutputCol("token")
+
+val dod_contextual_parser = ContextualParserModel.pretrained("date_of_death_parser", "en", "clinical/models") 
+    .setInputCols(Array("sentence", "token")) 
+    .setOutputCol("chunk_dod") 
+
+val chunk_converter = new ChunkConverter() 
+    .setInputCols(Array("chunk_dod")) 
+    .setOutputCol("ner_chunk")
+
+val parserPipeline = new Pipeline().setStages(Array(
+        document_assembler,
+        sentence_detector,
+        tokenizer,
+        dod_contextual_parser,
+        chunk_converter
+        ))
+
+val data = Seq(Array("""
+Record date : 2081-01-04
+DB : 11.04.1962
+DT : 12-03-1978
+DOD : 10.25.23
+
+SOCIAL HISTORY:
+Jane Doe was born on November 4, 1962, in London, and she got married on April 5, 1979.
+When she got pregnant on May 15, 1979, the doctor wanted to verify her date of birth, which was confirmed to be November 4, 1962.
+Jane was 45 years old when she sadly passed away on September 25, 2007.
+
+PROCEDURES:
+Patient Jane Doe was evaluated on March 15, 1988, for allergies. She was seen by the endocrinology service and was discharged on September 23, 1988.
+
+MEDICATIONS:
+1. Coumadin 1 mg daily. Jane's last INR was measured on August 14, 2007, and it was 2.3."""
+)).toDS.toDF("text")
+
+val result = parserPipeline.fit(data).transform(data)
+```
+</div>
+
+## Results
+
+```bash
++-----------+------------------+-----+---+---------+
+|sentence_id|chunk             |begin|end|ner_label|
++-----------+------------------+-----+---+---------+
+|3          |10.25.23          |64   |71 |DOD      |
+|5          |September 25, 2007|360  |377|DOD      |
++-----------+------------------+-----+---+---------+
+```
+
+{:.model-param}
+## Model Information
+
+{:.table-model}
+|---|---|
+|Model Name:|date_of_death_parser|
+|Compatibility:|Healthcare NLP 5.1.2+|
+|License:|Licensed|
+|Edition:|Official|
+|Input Labels:|[sentence, token]|
+|Output Labels:|[chunk_dod]|
+|Language:|en|
+|Size:|5.0 KB|
+|Case sensitive:|false|