links cecileane/crsl4 -> juliaphylo (#13)

README.md

@@ -1,9 +1,9 @@
 # PhyloCoalSimulations
 
-[![stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://cecileane.github.io/PhyloCoalSimulations.jl/stable)
-[![dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://cecileane.github.io/PhyloCoalSimulations.jl/dev)
-[![Build Status](https://github.com/cecileane/PhyloCoalSimulations.jl/actions/workflows/CI.yml/badge.svg?branch=main)](https://github.com/cecileane/PhyloCoalSimulations.jl/actions/workflows/CI.yml?query=branch%3Amain)
-[![Coverage](https://codecov.io/gh/cecileane/PhyloCoalSimulations.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/cecileane/PhyloCoalSimulations.jl)
+[![stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://juliaphylo.github.io/PhyloCoalSimulations.jl/stable)
+[![dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://juliaphylo.github.io/PhyloCoalSimulations.jl/dev)
+[![Build Status](https://github.com/juliaphylo/PhyloCoalSimulations.jl/actions/workflows/CI.yml/badge.svg?branch=main)](https://github.com/juliaphylo/PhyloCoalSimulations.jl/actions/workflows/CI.yml?query=branch%3Amain)
+[![Coverage](https://codecov.io/gh/juliaphylo/PhyloCoalSimulations.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/juliaphylo/PhyloCoalSimulations.jl)
 [![Code Style: Blue](https://img.shields.io/badge/code%20style-blue-4495d1.svg)](https://github.com/invenia/BlueStyle)
 [![ColPrac: Contributor's Guide on Collaborative Practices for Community Packages](https://img.shields.io/badge/ColPrac-Contributor's%20Guide-blueviolet)](https://github.com/SciML/ColPrac)
 [![PkgEval](https://JuliaCI.github.io/NanosoldierReports/pkgeval_badges/P/PhyloCoalSimulations.svg)](https://JuliaCI.github.io/NanosoldierReports/pkgeval_badges/report.html)

docs/make.jl

@@ -9,7 +9,7 @@ makedocs(;
     sitename="PhyloCoalSimulations.jl",
     format=Documenter.HTML(;
         prettyurls=get(ENV, "CI", "false") == "true",
-        canonical="https://cecileane.github.io/PhyloCoalSimulations.jl/stable/",
+        canonical="https://juliaphylo.github.io/PhyloCoalSimulations.jl/stable/",
         assets=String[],
     ),
     pages=[
@@ -29,7 +29,7 @@ makedocs(;
 )
 
 deploydocs(;
-    repo="github.com/cecileane/PhyloCoalSimulations.jl",
+    repo="github.com/JuliaPhylo/PhyloCoalSimulations.jl",
     devbranch="main",
     push_preview = true,
 )

docs/readme.md

@@ -1,7 +1,7 @@
 # notes to maintain documentation
 
 - built with [Documenter](https://juliadocs.github.io/Documenter.jl)
-- deployed [here](https://cecileane.github.io/PhyloCoalSimulations.jl/)
+- deployed [here](https://juliaphylo.github.io/PhyloCoalSimulations.jl/)
   (go to `dev/` or `stable/`)
   using github and files committed to the `gh-pages` branch.
 

docs/src/index.md

@@ -4,14 +4,14 @@ CurrentModule = PhyloCoalSimulations
 
 # PhyloCoalSimulations
 
-[PhyloCoalSimulations](https://github.com/cecileane/PhyloCoalSimulations.jl)
+[PhyloCoalSimulations](https://github.com/juliaphylo/PhyloCoalSimulations.jl)
 is a [Julia](http://julialang.org) package to
 simulate phylogenies under the coalescent.
-It depends on [PhyloNetworks](https://github.com/crsl4/PhyloNetworks.jl)
+It depends on [PhyloNetworks](https://github.com/juliaphylo/PhyloNetworks.jl)
 for the phylogenetic data structures, and manipulation of phylogenies.
 
 References:
-please see [bibtex entries here](https://github.com/cecileane/PhyloCoalSimulations.jl/blob/main/CITATION.bib).
+please see [bibtex entries here](https://github.com/juliaphylo/PhyloCoalSimulations.jl/blob/main/CITATION.bib).
 
 - for this package and the network coalescent model with inheritance correlation:\
   Fogg, Allman & Ané (2023).
@@ -21,7 +21,7 @@ please see [bibtex entries here](https://github.com/cecileane/PhyloCoalSimulatio
   72(5):1171–1179.
   [doi:10.1093/sysbio/syad030](https://doi.org/10.1093/sysbio/syad030).
 
-- for [PhyloNetworks](https://github.com/crsl4/PhyloNetworks.jl),
+- for [PhyloNetworks](https://github.com/juliaphylo/PhyloNetworks.jl),
   which this package depends on:\
   Solís-Lemus, Bastide & Ané (2017).
   PhyloNetworks: a package for phylogenetic networks.