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jkemppainen committed Jan 12, 2022
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# GHS-DPP paper repository

This repository contains software and data used
in the paper titled

```
High-speed imaging of light-induced photoreceptor microsaccades in compound eyes
```

[Preprint (bioRxiv)](https://www.biorxiv.org/content/10.1101/2021.07.22.453335v2)


## Contents

- Gonio Imsoft (v0.6.0) - Fast goniometric imaging software
- Gonio Analysis (v0.0.2) - Goniometric (motion) analysis software
- GHS-DPP dataset (v1.0.0) (av1 compressed)
* wild-type
* *spam*
* honeybee

For further details, please see the respective folders.


## External material

The supplementary videos (hosted in bioRxiv) show how

- [V1 (illustration)](https://www.biorxiv.org/content/biorxiv/early/2021/12/19/2021.07.22.453335/DC1/embed/media-1.mp4?download=true): the GHS-DPP microscopy was put together
- [V2 (illustration)](https://www.biorxiv.org/content/biorxiv/early/2021/12/19/2021.07.22.453335/DC2/embed/media-2.mp4?download=true): the GHS-DPP microscopy works
- [V3 (results)](https://www.biorxiv.org/content/biorxiv/early/2021/12/19/2021.07.22.453335/DC3/embed/media-3.mp4?download=true): Drosophila's ommatidial rhabdomere orientation matches the optic flow during forward translation
- [V4 (illustration/simulation)](https://www.biorxiv.org/content/biorxiv/early/2021/12/19/2021.07.22.453335/DC4/embed/media-4.mp4?download=true):
a) the number of locally activated photoreceptor microsaccades depends on the angular size of the light stimulus
b) the number of ommatidial photoreceptors pooled in the DPP imaging depends on the microscope system's numerical aperture (NA)
- [V5: (results)](https://www.biorxiv.org/content/biorxiv/early/2021/12/19/2021.07.22.453335/DC5/embed/media-5.mp4?download=true) wild-type and spam microsaccades are
- [V6: (results)](https://www.biorxiv.org/content/biorxiv/early/2021/12/19/2021.07.22.453335/DC6/embed/media-6.mp4?download=true) photoreceptor microsaccade movement directions match the ommatidial rhabdomere orientation happen across the Drosophila eyes


The contents of this repository are also available as Zenodo uploads

- Imaging and analysis software: [10.5281/zenodo.5824758](https://www.doi.org/10.5281/zenodo.5824758)
- GHS-DPP dataset (av1 compressed): [10.5281/zenodo.5824671](https://www.doi.org/10.5281/zenodo.5824671)

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