Merge pull request #150 from ctmrbio/develop

Add cpus to shovill
KThorellGroup · Feb 1, 2021 · 42283ee · 42283ee
2 parents 68cbd92 + 7386466
commit 42283ee
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/modules/shovill/shovill.nf b/modules/shovill/shovill.nf
@@ -16,6 +16,7 @@ process SHOVILL {
          --depth ${params.shovill_depth} \
          --kmers ${params.shovill_kmers} \
          --minlen ${params.shovill_minlen} \
+         --cpus ${task.cpus} \
          --R1 ${reads[0]} \
          --R2 ${reads[1]} \
          --outdir ${pair_id}_shovill