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kwrobot
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Sep 6, 2018
cmake_minimum_required(VERSION 3.9.5 FATAL_ERROR)
foreach(p
## Only policies introduced after the cmake_minimum_required
## version need to explicitly be set to NEW.
CMP0070 #3.10.0 Define ``file(GENERATE)`` behavior for relative paths.
CMP0071 #3.10.0 Let ``AUTOMOC`` and ``AUTOUIC`` process ``GENERATED`` files.
)
if(POLICY ${p})
cmake_policy(SET ${p} NEW)
endif()
endforeach()
Change-Id: I30c9a4f2401bf83bcdb56ba89d44b24ca8342853
kwrobot
pushed a commit
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Mar 4, 2021
…n metric Fix uninitialized variable use in `ANTS` neighborhood correlation metric: ensure that `fixedImageGradient` and `movingImageGradient` have valid values before assigning them to the `scanMem` struct that scans over images. Fixes: ``` Run-Time Check Failure #3 - The variable 'fixedImageGradient' is being used without being initialized. ``` The bug was affecting a number of tests in the `ITKRegistrationMethodsv4Test` module. Signaled at https://open.cdash.org/viewTest.php?onlyfailed&buildid=7067466 and https://open.cdash.org/viewTest.php?onlyfailed&buildid=7069241
kwrobot
pushed a commit
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Apr 29, 2024
Found with thread sanitizer (TSan) running the `itkANTSNeighborhoodCorrelationImageToImageRegistrationTest` unit test.
There was already a `m_ANTSAssociateOnceFlag` flag for use with `std::call_once`, so I just used that in this place too (it's already used elsewhere).
Partial backtrace from TSan:
```
WARNING: ThreadSanitizer: data race (pid=79176)
Write of size 8 at 0x000108f02240 by thread T2:
#0 void itk::ANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader<itk::ThreadedIndexedContainerPartitioner, itk::ImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>, itk::ANTSNeighborhoodCorrelationImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>>::ThreadedExecution_impl<itk::ThreadedIndexedContainerPartitioner>(itk::IdentityHelper<itk::ThreadedIndexedContainerPartitioner>, itk::Index<2u> const&, unsigned int) itkANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader.hxx:118 (ITKMetricsv4TestDriver:arm64+0x1004bfe50)
#1 itk::ANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader<itk::ThreadedIndexedContainerPartitioner, itk::ImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>, itk::ANTSNeighborhoodCorrelationImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>>::ThreadedExecution(itk::Index<2u> const&, unsigned int) itkANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader.h:235 (ITKMetricsv4TestDriver:arm64+0x1004bf9c0)
#2 itk::DomainThreader<itk::ThreadedIndexedContainerPartitioner, itk::ImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>>::ThreaderCallback(void*) itkDomainThreader.hxx:123 (ITKMetricsv4TestDriver:arm64+0x100259b6c)
#3 std::__1::future<std::__1::invoke_result<void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*>::type> itk::ThreadPool::AddWork<void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*>(void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*&&)::'lambda'()::operator()() const itkThreadPool.h:92 (ITKMetricsv4TestDriver:arm64+0x1007d3228)
#4 decltype(std::declval<void* (*&)(void*)>()(std::declval<itk::PoolMultiThreader::ThreadPoolInfoStruct*>())) std::__1::__invoke[abi:v160006]<std::__1::future<std::__1::invoke_result<void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*>::type> itk::ThreadPool::AddWork<void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*>(void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*&&)::'lambda'()&>(void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*&&) invoke.h:394 (ITKMetricsv4TestDriver:arm64+0x1007d31a4)
Previous write of size 8 at 0x000108f02240 by thread T14:
#0 void itk::ANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader<itk::ThreadedIndexedContainerPartitioner, itk::ImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>, itk::ANTSNeighborhoodCorrelationImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>>::ThreadedExecution_impl<itk::ThreadedIndexedContainerPartitioner>(itk::IdentityHelper<itk::ThreadedIndexedContainerPartitioner>, itk::Index<2u> const&, unsigned int) itkANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader.hxx:118 (ITKMetricsv4TestDriver:arm64+0x1004bfe50)
#1 itk::ANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader<itk::ThreadedIndexedContainerPartitioner, itk::ImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>, itk::ANTSNeighborhoodCorrelationImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>>::ThreadedExecution(itk::Index<2u> const&, unsigned int) itkANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader.h:235 (ITKMetricsv4TestDriver:arm64+0x1004bf9c0)
#2 itk::DomainThreader<itk::ThreadedIndexedContainerPartitioner, itk::ImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>>::ThreaderCallback(void*) itkDomainThreader.hxx:123 (ITKMetricsv4TestDriver:arm64+0x100259b6c)
#3 std::__1::future<std::__1::invoke_result<void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*>::type> itk::ThreadPool::AddWork<void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*>(void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*&&)::'lambda'()::operator()() const itkThreadPool.h:92 (ITKMetricsv4TestDriver:arm64+0x1007d3228)
#4 decltype(std::declval<void* (*&)(void*)>()(std::declval<itk::PoolMultiThreader::ThreadPoolInfoStruct*>())) std::__1::__invoke[abi:v160006]<std::__1::future<std::__1::invoke_result<void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*>::type> itk::ThreadPool::AddWork<void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*>(void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*&&)::'lambda'()&>(void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*&&) invoke.h:394 (ITKMetricsv4TestDriver:arm64+0x1007d31a4)
```
kwrobot
pushed a commit
that referenced
this pull request
May 30, 2024
Found with thread sanitizer (TSan) running the `itkANTSNeighborhoodCorrelationImageToImageRegistrationTest` unit test.
There was already a `m_ANTSAssociateOnceFlag` flag for use with `std::call_once`, so I just used that in this place too (it's already used elsewhere).
Partial backtrace from TSan:
```
WARNING: ThreadSanitizer: data race (pid=79176)
Write of size 8 at 0x000108f02240 by thread T2:
#0 void itk::ANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader<itk::ThreadedIndexedContainerPartitioner, itk::ImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>, itk::ANTSNeighborhoodCorrelationImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>>::ThreadedExecution_impl<itk::ThreadedIndexedContainerPartitioner>(itk::IdentityHelper<itk::ThreadedIndexedContainerPartitioner>, itk::Index<2u> const&, unsigned int) itkANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader.hxx:118 (ITKMetricsv4TestDriver:arm64+0x1004bfe50)
#1 itk::ANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader<itk::ThreadedIndexedContainerPartitioner, itk::ImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>, itk::ANTSNeighborhoodCorrelationImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>>::ThreadedExecution(itk::Index<2u> const&, unsigned int) itkANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader.h:235 (ITKMetricsv4TestDriver:arm64+0x1004bf9c0)
#2 itk::DomainThreader<itk::ThreadedIndexedContainerPartitioner, itk::ImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>>::ThreaderCallback(void*) itkDomainThreader.hxx:123 (ITKMetricsv4TestDriver:arm64+0x100259b6c)
#3 std::__1::future<std::__1::invoke_result<void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*>::type> itk::ThreadPool::AddWork<void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*>(void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*&&)::'lambda'()::operator()() const itkThreadPool.h:92 (ITKMetricsv4TestDriver:arm64+0x1007d3228)
#4 decltype(std::declval<void* (*&)(void*)>()(std::declval<itk::PoolMultiThreader::ThreadPoolInfoStruct*>())) std::__1::__invoke[abi:v160006]<std::__1::future<std::__1::invoke_result<void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*>::type> itk::ThreadPool::AddWork<void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*>(void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*&&)::'lambda'()&>(void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*&&) invoke.h:394 (ITKMetricsv4TestDriver:arm64+0x1007d31a4)
Previous write of size 8 at 0x000108f02240 by thread T14:
#0 void itk::ANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader<itk::ThreadedIndexedContainerPartitioner, itk::ImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>, itk::ANTSNeighborhoodCorrelationImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>>::ThreadedExecution_impl<itk::ThreadedIndexedContainerPartitioner>(itk::IdentityHelper<itk::ThreadedIndexedContainerPartitioner>, itk::Index<2u> const&, unsigned int) itkANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader.hxx:118 (ITKMetricsv4TestDriver:arm64+0x1004bfe50)
#1 itk::ANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader<itk::ThreadedIndexedContainerPartitioner, itk::ImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>, itk::ANTSNeighborhoodCorrelationImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>>::ThreadedExecution(itk::Index<2u> const&, unsigned int) itkANTSNeighborhoodCorrelationImageToImageMetricv4GetValueAndDerivativeThreader.h:235 (ITKMetricsv4TestDriver:arm64+0x1004bf9c0)
#2 itk::DomainThreader<itk::ThreadedIndexedContainerPartitioner, itk::ImageToImageMetricv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double, itk::DefaultImageToImageMetricTraitsv4<itk::Image<double, 2u>, itk::Image<double, 2u>, itk::Image<double, 2u>, double>>>::ThreaderCallback(void*) itkDomainThreader.hxx:123 (ITKMetricsv4TestDriver:arm64+0x100259b6c)
#3 std::__1::future<std::__1::invoke_result<void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*>::type> itk::ThreadPool::AddWork<void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*>(void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*&&)::'lambda'()::operator()() const itkThreadPool.h:92 (ITKMetricsv4TestDriver:arm64+0x1007d3228)
#4 decltype(std::declval<void* (*&)(void*)>()(std::declval<itk::PoolMultiThreader::ThreadPoolInfoStruct*>())) std::__1::__invoke[abi:v160006]<std::__1::future<std::__1::invoke_result<void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*>::type> itk::ThreadPool::AddWork<void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*>(void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*&&)::'lambda'()&>(void* (*&)(void*), itk::PoolMultiThreader::ThreadPoolInfoStruct*&&) invoke.h:394 (ITKMetricsv4TestDriver:arm64+0x1007d31a4)
```
- Follow-up to pull request #4964 commit 4926511 "STYLE: Replace `Pointer var; var = x` with `Pointer var = x`" Triggered by a comment by Bradley Lowekamp at #4964 (comment)
- Follow-up to pull request #4964 commit 677b761 "STYLE: Replace T::Pointer with auto when initializing variables by New()" Triggered by a comment by Bradley Lowekamp at #4964 (comment)
Using Notepad++, Replace in Files, doing:
Find what: ^( [ ]+)([^ ][^=\r\n]*[Ii]terator[^=\r\n]*)([ ]+)(\w+[Ii]t);[\r\n]+\1\4\ =
Replace with: $1$2$3$4 =
Filters: itk*.* !+\test
Directory: D:\src\ITK\Modules
[v] Match case
(*) Regular expression
- Follow-up to pull request #4964
commit 4926511
"STYLE: Replace `Pointer var; var = x` with `Pointer var = x`"
This value is used for setting the publicly defined TIFFLIB_VERSION macro. DCMTK uses this value.
For any ITK type `T`, `T::New()` does already initialize the object it returns.
Using Notepad++, Replace in Files, doing:
Find what: (\w+)([ ]+= .+::New\(\);)\r\n[\r\n]* [ ]+\1->Initialize\(\);
Replace with: $1$2
Filters: itk*.* !+\test
Directory: D:\src\ITK\Modules
[v] Match case
(*) Regular expression
Manually removed an obsolete comment saying `Clear elements`.
Code extracted from:
https://github.com/libjpeg-turbo/libjpeg-turbo.git
at commit f29eda648547b36aa594c4116c7764a6c8a079b9 (3.0.4).
# By libjpeg-turbo Upstream * upstream-jpeg-turbo: jpeg-turbo 2024-09-14 (f29eda64)
BUG: Set LIBTIFF_RELEASE_DATE in libtiff CMake configuration
DCMTK external project's configuration support forwarding ITK modules properties, not cmake target properties. Update libtiff's ITK module include properties to include the directory of the configuration files. Remove unneeded includes.
ITK/Modules/Numerics/FEM/include/itkFEMImageMetricLoad.hxx:579:10: warning: variable 'chebycoefs0' set but not used [-Wunused-but-set-variable]
BUG: Update libtiff's ITK module include paths
Simplify the code by returning as soon as the condition is known to be false. Remove unnecessary "ok" temporary variable.
For most ITK types, `p->Initialize()` has no effect, directly after `p = T::New()`, so the `Initialize()` call might as well be removed. Excluded a `randomNumberGenerator->Initialize()` call from this commit, as that call appears to actually have an effect (randomizing the seed). - Follow-up to pull request #4972 commit 674b3d2 "STYLE: Remove `p->Initialize()` calls directly after `p = T::New()`"
Avoided GCC warnings about an implicitly-declared copy-constructor [-Wdeprecated-copy].
Using Notepad++, Replace in Files, doing:
Find what: ^( [ ]+)([^ ][^=\r\n]*)([ ]+)(\w+);[\r\n]+\1\4\ =
Replace with: $1$2$3$4 =
Filters: itk*.* !+\test
Directory: D:\src\ITK\Modules
[v] Match case
(*) Regular expression
Excluded a few cases where the syntax `T var; var = x` appears intentional (in
ConceptChecking, ImageKmeansModelEstimator, MahalanobisDistanceThresholdImageFunction,
QuasiNewtonOptimizerv4Template, and VariableSizeMatrix).
- Following pull request #4970
commit 89b5bd0
"STYLE: Replace `Iterator it; it = x` with `Iterator it = x`"
and other similar commits for different types of variables.
Search for loop patterns for common locations where indexes can be initialized rather than assigned. regex: \( *[ijrc] *= *0;
Finds and replaces integer literals which are cast to bool.
cd ${BLDDIR}
run-clang-tidy.py -extra-arg=-D__clang__ -checks=-*,modernize-use-bool-literals -header-filter=.* -fix
Move copying input to output to before threaded methods, to ensure the operation has been completed before modifications.
Remove support for system installed versions of GDCM that are more than 10 years old. This simplifies the codebase for code that has likely not been explicitly tested in a very long time.
The emptiness of a container should be checked using the empty() method
instead of the size() method. It is not guaranteed that size() is a
constant-time function, and it is generally more efficient and also
shows clearer intent to use empty(). Furthermore some containers may
implement the empty() method but not implement the size() method. Using
empty() whenever possible makes it easier to switch to another container
in the future.
cd ${BLDDIR}
run-clang-tidy.py -extra-arg=-D__clang__ -checks=-*,readability-container-size-empty -header-filter=.* -fix
cmake 3.31 does an implicit conversion of paths like:
```
/myvenv/site-packages//itk --> /myvenv/site-packages/itk
^^ ^
```
which produces many warnings like:
```txt
ITKCommon: Creating itkAnatomicalOrientation submodule.
CMake Warning (dev) at Wrapping/Generators/Python/CMakeLists.txt:88 (install):
Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run
"cmake --help-policy CMP0177" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
Call Stack (most recent call first):
Wrapping/Generators/Python/CMakeLists.txt:305 (wrap_itk_python_bindings_install)
Wrapping/Generators/Python/CMakeLists.txt:380 (itk_setup_swig_python)
Wrapping/macro_files/itk_auto_load_submodules.cmake:328 (itk_end_wrap_submodule_python)
Wrapping/TypedefMacros.cmake:1331 (itk_auto_load_submodules)
Modules/Core/Common/wrapping/CMakeLists.txt:63 (itk_auto_load_and_end_wrap_submodules)
```
Explicitly normalizing the path before calling the install command suppresses the message.
Replace in Files, doing:
Find what: ^( [ ]+)([^ ].*)[ ]+(\w+);[\r\n]+\1\3\.Fill\(
Replace with: $1auto $3 = MakeFilled<$2>\(
Filters: itk*.h;itk*.hxx;itk*.cxx
Directory: D:\src\ITK\Modules
[v] Match case
(*) Regular expression
Changing variable to const caused windows builds to fail. error C2666: 'MetaImage::SequenceID': 2 overloads have similar conversions Filtering\ImageFeature\include\itkZeroCrossingImageFilter.hxx(64): error C2668: 'itk::ImageRegion<3>::PadByRadius': ambiguous call to overloaded function Core\Common\include\itkImageRegion.h(333): note: could be 'void itk::ImageRegion<3>::PadByRadius(const __int64 [])' Core\Common\include\itkImageRegion.h(330): note: or 'void itk::ImageRegion<3>::PadByRadius(__int64)' Filtering\ImageFeature\include\itkZeroCrossingImageFilter.hxx(64): note: while trying to match the argument list '(const itk::SizeValueType)' Filtering\ImageFeature\include\itkZeroCrossingImageFilter.hxx(43): note: while compiling class template member function 'void itk::ZeroCrossingImageFilter<itk::Image<float,3>,itk::Image<float,3>>::GenerateInputRequestedRegion(void)' Segmentation\LevelSets\include\itkSparseFieldLevelSetImageFilter.hxx(470): note: see reference to class template instantiation 'itk::ZeroCrossingImageFilter<itk::Image<float,3>,itk::Image<float,3>>' being compiled Segmentation\LevelSets\include\itkSparseFieldLevelSetImageFilter.hxx(454): note: while compiling class template member function 'void itk::SparseFieldLevelSetImageFilter<TInputImage,TOutputImage>::CopyInputToOutput(void)'
Making variables const identified that the requestedRegion was an unused variable. Modules/Filtering/ImageGrid/test/itkCropImageFilterTest.cxx:82:31: warning: unused variable 'requestedRegion' [-Wunused-variable] Expanded the testing to ensure that all 3 cropped regions are updated to the same size & index values.
The ivar m_Factor was a constant that did not require state to be saved. The computation can be done at compile time, thus saving runtime computations. Move m_Factor from an ivar to a constexpr in the one place it is used.
Use if constexpr to limit the compilation of code in
cases where array index access would fall outside
data structures in cases that should never be used.
Modules/Segmentation/LevelSets/include/itkLevelSetFunction.hxx:138:83:
warning: array index 2 is past the end of the array (that has type 'ScalarValueType[2]' (aka 'float[2]')) [-Warray-bounds]
138 | (gd->m_dx[i0] * gd->m_dx[i0] + gd->m_dx[i1] * gd->m_dx[i1] + gd->m_dx[i2] * gd->m_dx[i2]);
|
Instrumenting with [[maybe_unused]] to suppress
Modules/Segmentation/LevelSets/include/itkLevelSetFunction.hxx:119:82:
warning: parameter 'gd' set but not used [-Wunused-but-set-parameter]
Hdf5 1.14.5
To demonstrate that this is an active project with a large community.
We want the same behavior as SetOutputParametersFromImage. Without this, a crash occurs on Update().
Implements detection of local variables which could be declared as const but
are not. Declaring variables as const is recommended by many coding
guidelines, such as: ES.25 from the C++ Core Guidelines.
cd ${BLDDIR}
run-clang-tidy.py -extra-arg=-D__clang__ -checks=-*,misc-const-correctness -header-filter=.* -fix
IDE can identify these cases, but code changes are implemented manually
REPLACE: (^ *)const *([a-zA-Z0-9_:]* [0-9a-zA-Z_]* = *[\+\-e0-9\.]+;)
WITH: $1constexpr $2
REPLACE: (^ *)const (\w* \w*\{\}\;)
WITH: $1constexpr $2
If statement with compile-time constant can be replaced with "if constexpr"
The test for epsilon > 0 is always true because epsilon is a constexpr greater than 0.
[CTest: warning matched] /Users/builder/externalModules/Filtering/ImageCompare/test/itkSimilarityIndexImageFilterTest.cxx:63:18:
warning: result of comparison of 0 <= unsigned expression is always true [-Wtautological-unsigned-zero-compare]
63 | if (lower1 <= count && count <= upper1)
| ~~~~~~ ^ ~~~~~
[CTest: warning suppressed] 1 warning generated.
Windows build failed when making an unused variable constexpr. Modules\Core\Common\test\itkVectorContainerTest.cxx(54): error C2127: 'p_null': illegal initialization of 'constexpr' entity with a non-constant expression Remove the unused variable to avoid the problem.
This is a follow-up to commit 4cbe24c, PR #5030: #5030 The error message was: FAILED: Wrapping/Generators/Python/itk/ITKCommon-6.0.dll lib/ITKCommon-6.0.lib C:\Windows\system32\cmd.exe /C "cd . && "C:\Program Files\CMake\bin\cmake.exe" -E vs_link_dll --msvc-ver=1929 --intdir=Modules\Core\Common\src\CMakeFiles\ITKCommon.dir --rc=C:\PROGRA~2\WI3CF2~1\10\bin\100226~1.0\x64\rc.exe --mt=C:\PROGRA~2\WI3CF2~1\10\bin\100226~1.0\x64\mt.exe --manifests -- C:\PROGRA~2\MICROS~2\2019\ENTERP~1\VC\Tools\MSVC\1429~1.301\bin\Hostx64\x64\link.exe /nologo @CMakeFiles\ITKCommon.rsp /out:Wrapping\Generators\Python\itk\ITKCommon-6.0.dll /implib:lib\ITKCommon-6.0.lib /pdb:Wrapping\Generators\Python\itk\ITKCommon-6.0.pdb /dll /version:1.0 /machine:x64 /INCREMENTAL:NO && cd ." LINK: command "C:\PROGRA~2\MICROS~2\2019\ENTERP~1\VC\Tools\MSVC\1429~1.301\bin\Hostx64\x64\link.exe /nologo @CMakeFiles\ITKCommon.rsp /out:Wrapping\Generators\Python\itk\ITKCommon-6.0.dll /implib:lib\ITKCommon-6.0.lib /pdb:Wrapping\Generators\Python\itk\ITKCommon-6.0.pdb /dll /version:1.0 /machine:x64 /INCREMENTAL:NO /MANIFEST:EMBED,ID=2" failed (exit code 1104) with the following output: LINK : fatal error LNK1104: cannot open file 'python311.lib' Closes #5075.
Using float space precision is not supported with wrapping python. The python wrapping assumes a limited number of types, and those types would need to be aliased for supporting float space continuous indexes (and other types)
Need to match precision for types used to allow building. In a few cases double precision was assumed for values related to spacing precision.
Tested by means of `CheckConstexprBeginAndEndOfContainer()`. Note that these default-constructors were already `constexpr` _implicitly_, as implied by `= default`, when `ITK_FUTURE_LEGACY_REMOVE` would be enabled. Used the expression `Superclass(Superclass())` as a workaround for a compiler bug from GCC 9.4.0, causing warnings like: In file included from itkNumericTraitsTest.cxx:42: itkNumericTraitsRGBPixel.h: In function 'CheckVariableLengthArrayTraits(const T&) [with T = itk::RGBPixel<char>]': itkNumericTraitsRGBPixel.h:118:17: warning: '<anonymous>' may be used uninitialized in this function [-Wmaybe-uninitialized]
Core/Transform/test/itkTransformTest.cxx:224:46: error:
default initialization of an object of const type 'const
itk::itkTransformTestHelpers::TransformTester<double, 3,
3>::InputSymmetricSecondRankTensorType' (aka 'const
SymmetricSecondRankTensor<double, 3U>') without a user-provided default
constructor const InputSymmetricSecondRankTensorType ssrten;
^
{}
Hide additional HDF5 cmake variables by marking them as internal and prevent deeper CMake files from force setting otherwise.
Following C++ Core Guidelines, Oct 3, 2024, "Avoid casts", http://isocpp.github.io/CppCoreGuidelines/CppCoreGuidelines#es48-avoid-casts
COMP: Address non-const operations when TBB enabled in test
The behavior of setting individual m_ShrinkFactor elements should be the same as setting from an array of shrinkFactors.
BUG: GenerateImageSource sets Size from ReferenceImage
Replace non-portable "long" type with "int".
…ageMetric Weights caching is used for derivative calculation to reduce registration time with BSplineTransforms. Currently only implemented for MeanSquaresImageToImageMetric, other metrics to be added at a later date.
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