Merge pull request #11 from Kitware/configure-ci

basic CI and fixing client linting

.github/workflows/ci.yaml

@@ -0,0 +1,127 @@
+name: CI
+on:
+  pull_request:
+    types: [opened, synchronize]
+  push:
+    branches:
+      - "main"
+env:
+  DJANGO_CONFIGURATION: DevelopmentConfiguration
+  DJANGO_DATABASE_URL: postgres://postgres:postgres@postgres:5432/django
+  DJANGO_CELERY_BROKER_URL: amqp://rabbitmq:5672/
+  DJANGO_MINIO_STORAGE_ACCESS_KEY: minioAccessKey
+  DJANGO_MINIO_STORAGE_SECRET_KEY: minioSecretKey
+  DJANGO_STORAGE_BUCKET_NAME: django-storage
+jobs:
+  lint-python:
+    name: Lint Python
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+      - name: Setup Python environment
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.10"
+      - name: Install pre-commit
+        run: pip install pre-commit
+      - name: Cache pre-commit hooks
+        uses: actions/cache@v3
+        with:
+          path: ~/.cache/pre-commit/
+          key: pre-commit-cache|${{ env.pythonLocation }}|${{ hashFiles('.pre-commit-config.yaml') }}
+      - name: Run pre-commit checks
+        run: pre-commit run --all-files
+  lint-node:
+    strategy:
+      fail-fast: false
+      matrix:
+        linter: [eslint, typescript]
+    name: Lint [${{ matrix.linter }}]
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+      - name: Setup Node environment
+        uses: actions/setup-node@v4
+        with:
+          cache: npm
+          cache-dependency-path: client/package-lock.json
+      - name: Install packages
+        run: npm ci
+        working-directory: client
+      - name: Run ${{ matrix.linter }}
+        run: npm run lint:${{ matrix.linter }}
+        working-directory: client
+  test-django:
+    name: Test Django [${{ matrix.tox-env }}]
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        tox-env: [test, check-migrations]
+    services:
+      postgres:
+        image: postgis/postgis:latest
+        env:
+          POSTGRES_DB: django
+          POSTGRES_USER: postgres
+          POSTGRES_PASSWORD: postgres
+        ports:
+          - 5432:5432
+      rabbitmq:
+        image: rabbitmq:latest
+        ports:
+          - 5672:5672
+      minio:
+        # This image does not require any command arguments (which GitHub Actions don't support)
+        image: bitnami/minio:latest
+        env:
+          MINIO_ROOT_USER: minioAccessKey
+          MINIO_ROOT_PASSWORD: minioSecretKey
+        ports:
+          - 9000:9000
+        options: >-
+            --health-cmd "curl -I http://localhost:9000/minio/health/live"
+            --health-interval 10s
+            --health-timeout 5s
+            --health-retries 6
+            --health-start-period 30s
+  
+    steps:
+      - name: Update Package References
+        run: sudo apt-get update
+      - name: Install system dependencies
+        run: apt-fast install --no-install-recommends --yes
+          libgdal30
+          libproj22
+          python3-cachecontrol
+          python3-dev
+      - name: Checkout repository
+        uses: actions/checkout@v4
+      - name: Setup Python environment
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.10"
+      - name: Install tox
+        run: pip install tox
+      - name: Run tests
+        run: tox -e ${{ matrix.tox-env }}
+        working-directory: bats_ai
+  test-vue:
+    name: Test [vue]
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+      - name: Setup Node environment
+        uses: actions/setup-node@v4
+        with:
+          cache: npm
+          cache-dependency-path: client/package-lock.json
+      - name: Install packages
+        run: npm ci
+        working-directory: client
+      - name: Run tests
+        run: npm run test
+        working-directory: client

README.md

@@ -67,7 +67,7 @@ To do so, before running any `docker compose` commands, set any of the environme
 
 The Django server must be informed about the changes:
 * When running the "Develop with Docker" configuration, override the environment variables:
-  * `DJANGO_MINIO_STORAGE_MEDIA_URL`, using the port from `DOCKER_MINIO_PORT`.
+  * `DJANGO_MINIO_STORAGE_ENDPOINT`, using the port from `DOCKER_MINIO_PORT`.
 * When running the "Develop Natively" configuration, override the environment variables:
   * `DJANGO_DATABASE_URL`, using the port from `DOCKER_POSTGRES_PORT`
   * `DJANGO_CELERY_BROKER_URL`, using the port from `DOCKER_RABBITMQ_PORT`

bats_ai/core/migrations/0002_species.py

@@ -0,0 +1,29 @@
+# Generated by Django 4.1.13 on 2024-01-04 15:27
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+    dependencies = [
+        ('core', '0001_initial'),
+    ]
+
+    operations = [
+        migrations.CreateModel(
+            name='Species',
+            fields=[
+                (
+                    'id',
+                    models.BigAutoField(
+                        auto_created=True, primary_key=True, serialize=False, verbose_name='ID'
+                    ),
+                ),
+                ('species_code', models.CharField(blank=True, max_length=10, null=True)),
+                ('family', models.CharField(blank=True, max_length=50, null=True)),
+                ('genus', models.CharField(blank=True, max_length=50, null=True)),
+                ('species', models.CharField(blank=True, max_length=100, null=True)),
+                ('common_name', models.CharField(blank=True, max_length=100, null=True)),
+                ('species_code_6', models.CharField(blank=True, max_length=10, null=True)),
+            ],
+        ),
+    ]

bats_ai/settings.py

@@ -57,7 +57,23 @@ def DATABASES(self):  # noqa
 
 
 class DevelopmentConfiguration(BatsAiMixin, DevelopmentBaseConfiguration):
-    pass
+    SECRET_KEY = 'secretkey'  # Dummy value for local development configuration
+
+    DEFAULT_FILE_STORAGE = 'minio_storage.storage.MinioMediaStorage'
+    MINIO_STORAGE_ENDPOINT = values.Value(
+        'localhost:9000',
+    )
+    MINIO_STORAGE_USE_HTTPS = values.BooleanValue(False)
+    MINIO_STORAGE_ACCESS_KEY = values.SecretValue()
+    MINIO_STORAGE_SECRET_KEY = values.SecretValue()
+    MINIO_STORAGE_MEDIA_BUCKET_NAME = values.Value(
+        environ_name='STORAGE_BUCKET_NAME',
+        environ_required=True,
+    )
+    MINIO_STORAGE_AUTO_CREATE_MEDIA_BUCKET = True
+    MINIO_STORAGE_AUTO_CREATE_MEDIA_POLICY = 'READ_WRITE'
+    MINIO_STORAGE_MEDIA_USE_PRESIGNED = True
+    MINIO_STORAGE_MEDIA_URL = 'http://127.0.0.1:9000/rdwatch'
 
 
 class TestingConfiguration(BatsAiMixin, TestingBaseConfiguration):