Dice

##Occasionally Dishonest Casino Model

[Durbin, R., Eddy, S., Krogh, A., Mitchison, G., Biological Sequence Analysis: Probabilistic models of proteins and nucleic acids. Cambride University Press, 1998, pg 54]

##Model File

#STOCHHMM MODEL FILE
<MODEL INFORMATION>
======================================================
MODEL_NAME:	CASINO DICE MODEL
MODEL_DESCRIPTION:	Taken from CH3 Durbin/Eddy
MODEL_CREATION_DATE:	August 28,2009

<TRACK SYMBOL DEFINITIONS>
======================================================
DICE:	1,2,3,4,5,6

<STATE DEFINITIONS>
#############################################
STATE:	
	NAME:	INIT
TRANSITION:	STANDARD: P(X)
	FAIR:	0.5
	LOADED:	0.5
#############################################
STATE:	
	NAME:	FAIR
	PATH_LABEL:	F
	GFF_DESC:	FAIR
TRANSITION:	STANDARD: P(X)
	FAIR:	0.95
	LOADED:	0.05
	END:	1
EMISSION:	DICE: P(X)
	ORDER:	0
@1	2	3	4	5	6
0.167	0.167	0.167	0.167	0.167	0.167
#############################################
STATE:
	NAME:	LOADED
	PATH_LABEL:	L
	GFF_DESC:	LOADED
TRANSITION:	STANDARD: P(X)
	FAIR:	0.1
	LOADED:	0.9
	END:	1
EMISSION:	DICE: P(X)
	ORDER:	0
@1	2	3	4	5	6	
0.1	0.1	0.1	0.1	0.1	0.5
#############################################
//END

##Sequence File

>Dice
315116246446644245311321631164152133625144543631656626566666
651166453132651245636664631636663162326455236266666625151631
222555441666566563564324364131513465146353411126414626253356
366163666466232534413661661163252562462255265252266435353336
233121625364414432335163243633665562466662632666612355245242