Switch to subpar::parallelize_simple() for parallelization. #117
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| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| name: irlba comparison | |
| jobs: | |
| build: | |
| name: Compare to irlba reference | |
| runs-on: ubuntu-latest | |
| container: bioconductor/bioconductor_docker:devel | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get latest CMake | |
| uses: lukka/get-cmake@latest | |
| - name: Configure the build | |
| run: cmake -S . -B build -DBUILD_TESTING=OFF | |
| - name: Install packages | |
| shell: Rscript {0} | |
| run: | | |
| BiocManager::install(c("irlba", "Rcpp", "testthat")) | |
| - name: Build the test dependencies | |
| run: | | |
| cd tests/R | |
| bash build.sh | |
| - name: Run the comparisons | |
| shell: Rscript {0} | |
| run: | | |
| setwd("tests/R") | |
| output <- testthat::test_file("run.R") | |
| q(status=any(as.data.frame(output)$failed), save="no") |