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434 Open 1,861 Closed
434 Open 1,861 Closed
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Issues list

Installation instructions cleanup (sdg23)
#4929 opened Feb 24, 2025 by namiroues
1
XCT Writer distorts coordinates due to missing index Format-Gromacs
#4928 opened Feb 24, 2025 by pipitoludovico
The residue_index_map in closeContactGNMAnalysis has an error in selecting "name CA" Component-Analysis
#4924 opened Feb 21, 2025 by BHM-Bob
Undefined Variable Component-Converters
#4922 opened Feb 19, 2025 by mcsloy
1
Copy function did not return an independent entity?
#4921 opened Feb 19, 2025 by locitran
NoJump transformation fails in a non intuitive way when applied outside of the first frame Component-Transformations On-the-fly transformations usability
#4915 opened Feb 14, 2025 by IAlibay
1
2
Constructing empty universe and adding residue attributes gives error
#4914 opened Feb 14, 2025 by nambiarnik
1
Update secondary structure assignment in DSSP after an upstream fix Component-Analysis defect upstream issue in a dependency
#4913 opened Feb 12, 2025 by marinegor
1
mda.fetch_pdb() to generate Universe from Protein Databank structures Component-Readers enhancement Format-PDB topology-building
#4907 opened Feb 8, 2025 by orbeckst
5
Bugs for distance calculation functions Component-lib PBC
#4906 opened Feb 6, 2025 by zbaibg
1
Add time step parameter to XTC Writers and Readers enhancement Format-Gromacs
#4905 opened Feb 3, 2025 by pbuslaev
1
2
Make all mdakits imported & used in the core library optional and don't ship them on the conda-forge recipe with v2.9 release
#4899 opened Jan 25, 2025 by IAlibay
@IAlibay
9
Preserve Full Trajectory Information in Parallel Analysis Component-Analysis parallelization
#4891 opened Jan 13, 2025 by yuxuanzhuang
1
@yuxuanzhuang
4
issue with large dcd seeking Component-Readers defect Format-DCD
#4879 opened Jan 2, 2025 by qlearn-code
15
Feature proposal: Adding a ResidenceTime Analysis Routine Component-Analysis enhancement MDAKit suitable for MDAKit proposal
#4868 opened Dec 27, 2024 by mattiafelice-palermo
5
Support for numpy.dtypes.StringDType in AtomGroup containers? Component-Core enhancement
#4847 opened Dec 20, 2024 by jauy123
1
feat: add RelPropertySelection to select atoms based on positions relative to a given selection Component-Selections decision needed requires input from developers before moving further enhancement
#4838 opened Dec 16, 2024 by ChiahsinChu
1
5
Make the AnalysisBase compatible with live simulation streams Component-Analysis decision needed requires input from developers before moving further enhancement streaming
#4828 opened Dec 11, 2024 by ljwoods2
9
Adopt a reader for live-streamed Interactive MD (IMD) version 3 trajectories Component-Readers decision needed requires input from developers before moving further enhancement streaming
#4827 opened Dec 11, 2024 by ljwoods2
2
14
analysis.atomicdistances.AtomicDistances does not use Results API Component-Analysis decision needed requires input from developers before moving further defect parallelization
#4819 opened Dec 3, 2024 by orbeckst Release 3.0
8
Implement AnalysisBase class into MDAnalysis.analysis.hydrogenbonds.hbond_autocorrel Component-Analysis refactoring
#4818 opened Dec 3, 2024 by talagayev
1
[release 2.8.0] Python 3.13 conda-forge packages
#4805 opened Nov 26, 2024 by IAlibay
1
[release] TestPyPi post-deployment tests failing on some FULL tests
#4799 opened Nov 22, 2024 by IAlibay
remove mmtf in 3.0 Format-MMTF remove-3.0 deprecated and remove in release 3.0
#4796 opened Nov 22, 2024 by orbeckst Release 3.0
@IAlibay
4
LAMMPS DumpReader returns incorrect coordinate transform Component-Readers format-LAMMPS more information needed Please reply to requests for information or the issue will be closed.
#4788 opened Nov 13, 2024 by wjq1228
5
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