ReleaseNotes060

CHANGELOG

• 0.6.0 release
• added KDTree and Neighbour searching code from Biopython for faster distance selections: used for AROUND selections; POINT is using distance matrix by default as this is faster. This can be configured with core.flags
• core.flags infrastructure to tweak behaviour at run time
• updated LICENSE file with Biopython License
• some selections for nucleic acids
• completely reorganized directory structure to make enhancements easier to incorporate
• FIXED (partial): Issue 18 (Timeseries from a universe.segID selection, reported by lordnapi)
• FIXED: Issue 19 (Timeseries collections were broken, reported by Jiyong)
• can write single frames as pdb or crd (AtomGroup gained the write() method)
• improved installation
  • EasyInstall (setuptools) support (FIXED Issue 16)
  • better instructions in INSTALL
  • slightly better handling of the configuration of the fast linear algebra libs via the setup.cfg file