MGX2: v20240109

Bugfix release: downgrade commons-logging due to log4j issues

Thanks to @pblumenkamp for identifying this problem.

MGX2: v20231204

MGX2 maintenance release with various small fixes and dependency updates

• Netbeans platform 20.0
• internal changes to the KEGG module
• minor dependency updates

MGX2: Initial MGX 2.0 release

This is the first public MGX 2.0 release, which enhances over MGX 1.x with the addition of

• metagenome assembly support, including binning and bin assessment
• MAG annotation
• de novo metatranscriptome assembly

Please note that paired-end data is required to perform an assembly (single-ended data
can be included, though).

v20230710

Fix handling of proxy servers; autoconfiguration doesn't work, and proxy settings have to be configured manually once.

v20230706

• UI overhaul; use modern Look&Feel
• implement option to display lineages in table view

v20201129

v20201129 hotfix release - filter NCBI clade assignments, which might occur anywhere within a lineage, even multiple times

v20200926

Fix rarefaction

v20200925

implement tsv export for rarefaction

v20200508

• Reduce transfer message size during sequence import

v20200421

Bugfix release to fix server-side file selection