GitHub - MGX-metagenomics/tools: Build scripts for bioinformatics applications used by MGX

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Build scripts for bioinformatics applications used by MGX

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Name		Name	Last commit message	Last commit date
Latest commit History 785 Commits
patches		patches
Dockerfile		Dockerfile
Dockerfile.tmpl		Dockerfile.tmpl
amrfinderplus.build		amrfinderplus.build
amrfinderplus.deps		amrfinderplus.deps
antismash.build		antismash.build
bamstats.build		bamstats.build
base.build		base.build
bcftools.build		bcftools.build
bedtools.build		bedtools.build
blast.build		blast.build
blast.deps		blast.deps
blat.build		blat.build
bowtie2.build		bowtie2.build
bowtie2.deps		bowtie2.deps
build_order		build_order
bwa.build		bwa.build
centrifuge.build		centrifuge.build
checkm.build		checkm.build
checkm2.build		checkm2.build
concoct.build		concoct.build
concoct.deps		concoct.deps
conveyor.build		conveyor.build
cwltool.build		cwltool.build
dastool.build		dastool.build
dastool.deps		dastool.deps
diamond.build		diamond.build
dockerify.sh		dockerify.sh
dotnet.build		dotnet.build
fastani.build		fastani.build
fastp.build		fastp.build
fasttree.build		fasttree.build
featurecounts.build		featurecounts.build
flye.build		flye.build
fraggenescanplus.build		fraggenescanplus.build
fraggenescanrs.build		fraggenescanrs.build
frhit.build		frhit.build
frhit.deps		frhit.deps
glimmerhmm.build		glimmerhmm.build
gsl.build		gsl.build
gtdbtk.build		gtdbtk.build
hmmer2.build		hmmer2.build
hmmer3.build		hmmer3.build
idba.build		idba.build
infernal.build		infernal.build
jdk.build		jdk.build
jellyfish.build		jellyfish.build
jellyfish1.build		jellyfish1.build
kaiju.build		kaiju.build
kallisto.build		kallisto.build
kraken.build		kraken.build
kraken.deps		kraken.deps
kraken2.build		kraken2.build
kraken2.deps		kraken2.deps
krakenuniq.build		krakenuniq.build
lastplus.build		lastplus.build
libdeflate.build		libdeflate.build
lzma.build		lzma.build
magicblast.build		magicblast.build
magicblast.deps		magicblast.deps
mash.build		mash.build
megahit.build		megahit.build
megahit.deps		megahit.deps
meme.build		meme.build
metabat.build		metabat.build
metabat.deps		metabat.deps
metabinner.build		metabinner.build
metabuli.build		metabuli.build
metaphlan4.build		metaphlan4.build
mgx_conveyor.build		mgx_conveyor.build
mgx_cwltool.build		mgx_cwltool.build
mgxannotationclient.build		mgxannotationclient.build
minimap2.build		minimap2.build
mmseqs2.build		mmseqs2.build
mothur.build		mothur.build
muscle.build		muscle.build
phamer.build		phamer.build
plass.build		plass.build
pplacer.build		pplacer.build
prodigal.build		prodigal.build
protobuf.build		protobuf.build
python3.build		python3.build
r.build		r.build
r.deps		r.deps
rabbitqc.build		rabbitqc.build
raxml.build		raxml.build
rdpclassifier.build		rdpclassifier.build
rdpclassifier.deps		rdpclassifier.deps
ribodetector.build		ribodetector.build
rpackages.build		rpackages.build
salmon.build		salmon.build
samtools.build		samtools.build
semibin.build		semibin.build
smallscripts.build		smallscripts.build
spades.build		spades.build
strobealign.build		strobealign.build
tools.config		tools.config
transdecoder.build		transdecoder.build
trimmomatic.build		trimmomatic.build
trinity.build		trinity.build