Skip to content

Commit

Permalink
Update index.html
Browse files Browse the repository at this point in the history
  • Loading branch information
cpommier authored Oct 8, 2024
1 parent 24dc8ca commit e71d397
Showing 1 changed file with 20 additions and 19 deletions.
39 changes: 20 additions & 19 deletions index.html
Original file line number Diff line number Diff line change
Expand Up @@ -5,8 +5,26 @@
order: 1
---
<div class="blurb">
<h2>MIAPPE</h2>
<h4>Minimum Information About Plant Phenotyping Experiments</h4>
<h2>Minimum Information About Plant Phenotyping Experiments (MIAPPE)</h2>

<h3>MIAPPE primers</h3>
See the <a href="https://www.miappe.org/support/">support page</a> for full informations
<ul>
<li> Quick <a href="https://www.miappe.org/overview/">overview</a> of MIAPPE</li>
<li> <a href="https://tess.elixir-europe.org/materials/plant-phenotyping-data-managment-webinar-miappe">Webinar</a>, with video recording and slides introducing the fundamentals of MIAPPE</li>
<li><b><a href="https://github.com/MIAPPE/MIAPPE">Latest specifications</a></b>
<ul>
<li><a href="https://github.com/MIAPPE/MIAPPE/blob/master/MIAPPE_diagram.svg">data model</a> overview </li>
<li><a href="https://github.com/MIAPPE/MIAPPE">field list</a> with descriptions and examples in
<a href="https://github.com/MIAPPE/MIAPPE/blob/master/MIAPPE_Checklist_Data_Model.tsv">tsv</a>,
<a href="https://github.com/MIAPPE/MIAPPE/blob/master/MIAPPE_Checklist_Data_Model.pdf">PDF</a> and
<a href="https://github.com/MIAPPE/MIAPPE/raw/refs/heads/master/MIAPPE_Checklist_Data_Model.xlsx">Excel</a> format.</li>
</ul>
<li>Training and exchange <a href="https://github.com/MIAPPE/MIAPPE/tree/master/MIAPPE_Checklist-Data-Model-v1.1/MIAPPE_templates">templates</a></li>
<li><a href="https://github.com/MIAPPE/MIAPPE/tree/master/MIAPPE_Checklist-Data-Model-v1.1/MIAPPE_mapping">Mapping</a> between MIAPPE and other standards (<a href="https://isa-tools.org:">ISA-Tools</a> , <a href="https://brapi.docs.apiary.io/#">Breeding API (BrAPI)</a>)</li>
</ul>

<h3>About MIAPPE</h3>
<p>MIAPPE is an open, community driven, data standard designed to harmonize data from plant phenotyping experiments.
MIAPPE provides a specification including a checklist and a data model of metadata required to adequately describe plant phenotyping experiments.
You can have a quick <a href="https://www.miappe.org/overview/">overview</a> or go the the primer section below.
Expand All @@ -24,23 +42,6 @@ <h5>Mailing list registration</h5>
</p>


<h3>MIAPPE primers</h3>
See the <a href="https://www.miappe.org/support/">support page</a> for full informations
<ul>
<li> Quick <a href="https://www.miappe.org/overview/">overview</a> of MIAPPE</li>
<li> <a href="https://tess.elixir-europe.org/materials/plant-phenotyping-data-managment-webinar-miappe">Webinar</a>, with video recording and slides introducing the fundamentals of MIAPPE</li>
<li>Latest specifications
<ul>
<li> <a href="https://github.com/MIAPPE/MIAPPE/blob/master/MIAPPE_Checklist-Data-Model-v1.1/README.md">data model</a> overview </li>
<li><a href="https://github.com/MIAPPE/MIAPPE/tree/master/MIAPPE_Checklist-Data-Model-v1.1">field list</a> with descriptions and examples in
<a href="https://github.com/MIAPPE/MIAPPE/blob/master/MIAPPE_Checklist-Data-Model-v1.1/MIAPPE_Checklist-Data-Model-v1.1.tsv">tsv</a>,
<a href="https://github.com/MIAPPE/MIAPPE/blob/master/MIAPPE_Checklist-Data-Model-v1.1/MIAPPE_Checklist-Data-Model-v1.1.pdf">PDF</a> and
<a href="https://github.com/MIAPPE/MIAPPE/blob/master/MIAPPE_Checklist-Data-Model-v1.1/MIAPPE_Checklist-Data-Model-v1.1.tsv">Excel</a> format.</li>
</ul>
<li>Training and exchange <a href="https://github.com/MIAPPE/MIAPPE/tree/master/MIAPPE_Checklist-Data-Model-v1.1/MIAPPE_templates">templates</a></li>
<li><a href="https://github.com/MIAPPE/MIAPPE/tree/master/MIAPPE_Checklist-Data-Model-v1.1/MIAPPE_mapping">Mapping</a> between MIAPPE and other standards (<a href="https://isa-tools.org:">ISA-Tools</a> , <a href="https://brapi.docs.apiary.io/#">Breeding API (BrAPI)</a>)</li>
</ul>

<h3>Background</h3>

<p>Plant phenotyping data is diverse, dispersed and increasingly plentiful owing to the application of new automated techniques. While various initiatives have explored how to describe plant traits (e.g. the <a href="http://browser.planteome.org/amigo/term/TO:0000387#display-lineage-tab">Plant Trait Ontology</a>) and phenotypes, description of the experimental design that provides the context for phenotypic observations is not well-standardized. A basic description of the materials used and the experiment performed is needed to support data discovery and data mining applications. MIAPPE – the Minimal Information About a Plant Phenotyping Experiment – is in development to address these needs.</p>
Expand Down

0 comments on commit e71d397

Please sign in to comment.