deactivate docker creation in github actions because results in depen… #86
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| name: Run tests and upload to docker hub | |
| on: [push] | |
| jobs: | |
| run-tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| # python-version: [3.8, 3.9] # too many calls to zenodo download -> request limit | |
| python-version: [3.8] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{matrix.python-version}} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{matrix.python-version}} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pytest Cython | |
| pip install torch==1.8.1+cpu -f https://download.pytorch.org/whl/torch_stable.html | |
| pip install . | |
| - name: Run test script | |
| run: ./tests.sh | |
| shell: bash | |
| - name: Build Docker image | |
| run: docker build -t wasserth/tractseg_container:master -f Dockerfile_CPU . | |
| - name: Check build dir | |
| run: echo $(pwd) | |
| - name: Run Docker image | |
| run: docker run -v $(pwd)/examples:/data wasserth/tractseg_container:master TractSeg \-i /data/Diffusion.nii.gz -o /data/docker_test --raw_diffusion_input --single_orientation | |
| - name: Test csd peaks | |
| run: pytest -v tests/test_end_to_end.py::test_end_to_end::test_csd_peaks | |
| - name: Test tractseg docker | |
| run: pytest -v tests/test_end_to_end.py::test_end_to_end::test_tractseg_output_docker | |
| # upload-dockerhub: | |
| # runs-on: ubuntu-latest | |
| # needs: run-tests | |
| # if: success() && github.ref == 'refs/heads/master' | |
| # strategy: | |
| # matrix: | |
| # python-version: [3.8] | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - name: Login to Docker Hub | |
| # uses: docker/login-action@v1 | |
| # with: | |
| # username: ${{ secrets.DOCKER_HUB_USERNAME }} | |
| # password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | |
| # - name: Set up Docker Buildx | |
| # uses: docker/setup-buildx-action@v1 | |
| # - name: Build and push | |
| # uses: docker/build-push-action@v2 | |
| # with: | |
| # context: . | |
| # file: ./Dockerfile_CPU | |
| # push: true | |
| # tags: ${{ secrets.DOCKER_HUB_USERNAME }}/tractseg_container:master |