These codes are wtitten for the processing of WGS NGS data of tuberculosis samples. Java file will show how to call Linux shell scripts from the java code. Linux shell scripts are calling several open-source tools in turn. You need to put these binaries in the proper folder (take from my another repository).
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MatveySprindzuk/JavaFXTuberculosisGenomicsSoftware
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desktop software for the processing of WGS NGS data of tuberculosis
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