Skip to content

Commit

Permalink
first commit
Browse files Browse the repository at this point in the history
  • Loading branch information
@RohitKandimalla
RohitKandimalla committed Mar 3, 2022
0 parents commit b48bd37
Show file tree
Hide file tree
Showing 61 changed files with 94,899 additions and 0 deletions.
Binary file added .DS_Store
Binary file not shown.
30 changes: 30 additions & 0 deletions .gitignore
Original file line number Diff line number Diff line change
@@ -0,0 +1,30 @@
HELP.md
target/
!**/src/main/**
!**/src/test/**

### STS ###
.apt_generated
.classpath
.factorypath
.project
.settings
.springBeans
.sts4-cache

### IntelliJ IDEA ###
.idea
*.iws
*.iml
*.ipr

### NetBeans ###
/nbproject/private/
/nbbuild/
/dist/
/nbdist/
/.nb-gradle/
build/

### VS Code ###
.vscode/
12 changes: 12 additions & 0 deletions .jpb/persistence-units.xml
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="PersistenceUnitSettings">
<persistence-units>
<persistence-unit name="Default">
<packages>
<package value="" />
</packages>
</persistence-unit>
</persistence-units>
</component>
</project>
Binary file added .mvn/wrapper/maven-wrapper.jar
Binary file not shown.
8 changes: 8 additions & 0 deletions Dockerfile
Original file line number Diff line number Diff line change
@@ -0,0 +1,8 @@
FROM openjdk:15.0-jdk
ARG JAR_FILE=target/cql-elm-translation-0.0.1-SNAPSHOT.war
COPY ${JAR_FILE} app.jar

RUN curl -O https://download.newrelic.com/newrelic/java-agent/newrelic-agent/current/newrelic.jar \
&& curl -O https://download.newrelic.com/newrelic/java-agent/newrelic-agent/current/newrelic.yml

ENTRYPOINT ["java","-Dspring.profiles.active=docker","-javaagent:newrelic.jar","-jar","/app.jar"]
16 changes: 16 additions & 0 deletions docker-compose.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,16 @@
version: '3.6'

services:
cql-elm-translation:
image: cql-elm-translation
container_name: cql-elm-translation
build:
context: .
dockerfile: Dockerfile
environment:
FHIR_SERVICES_URL: ${FHIR_SERVICES_URL}
CQL_ELM_SWAGGER_URL: ${CQL_ELM_SWAGGER_URL}
MAT_API_KEY: ${MAT_API_KEY}
LOG_LEVEL: ${LOG_LEVEL}
ports:
- 7070:7070
197 changes: 197 additions & 0 deletions pom.xml
Original file line number Diff line number Diff line change
@@ -0,0 +1,197 @@
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://maven.apache.org/POM/4.0.0"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-parent</artifactId>
<version>2.6.4</version>
<relativePath/>
</parent>
<groupId>gov.cms.madie</groupId>
<artifactId>cql-elm-translation</artifactId>
<version>0.0.1</version>
<packaging>jar</packaging>

<name>CQL to ELM Translation Service</name>
<description>Translates CQL to ELM for MADiE</description>

<properties>
<java.version>16</java.version>
<maven.compiler.source>${java.version}</maven.compiler.source>
<maven.compiler.target>${java.version}</maven.compiler.target>
<cqframework.version>1.5.4</cqframework.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>

<dependencies>

<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-web</artifactId>
<exclusions>
<exclusion>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-to-slf4j</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-api</artifactId>
</exclusion>
</exclusions>
</dependency>

<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-tomcat</artifactId>
<scope>provided</scope>
</dependency>

<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-test</artifactId>
<scope>test</scope>
<exclusions>
<exclusion>
<groupId>org.junit.vintage</groupId>
<artifactId>junit-vintage-engine</artifactId>
</exclusion>
</exclusions>
</dependency>

<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-actuator</artifactId>
</dependency>

<dependency>
<groupId>org.projectlombok</groupId>
<artifactId>lombok</artifactId>
<scope>provided</scope>
</dependency>

<!-- Dependencies required to use cql to elm translator from cqFramework -->
<!-- https://github.com/cqframework/clinical_quality_language/blob/master/Src/java/cql-to-elm/OVERVIEW.md -->
<dependency>
<groupId>info.cqframework</groupId>
<artifactId>cql</artifactId>
<version>${cqframework.version}</version>
</dependency>
<dependency>
<groupId>info.cqframework</groupId>
<artifactId>model</artifactId>
<version>${cqframework.version}</version>
</dependency>
<dependency>
<groupId>info.cqframework</groupId>
<artifactId>cql-to-elm</artifactId>
<version>${cqframework.version}</version>
</dependency>
<dependency>
<groupId>info.cqframework</groupId>
<artifactId>elm</artifactId>
<version>${cqframework.version}</version>
</dependency>
<dependency>
<groupId>info.cqframework</groupId>
<artifactId>quick</artifactId>
<version>${cqframework.version}</version>
</dependency>
<dependency>
<groupId>info.cqframework</groupId>
<artifactId>qdm</artifactId>
<version>${cqframework.version}</version>
</dependency>

<dependency>
<groupId>javax.ws.rs</groupId>
<artifactId>javax.ws.rs-api</artifactId>
<version>2.1.1</version>
</dependency>
<dependency>
<groupId>net.sf.saxon</groupId>
<artifactId>Saxon-HE</artifactId>
<version>11.2</version>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.11.0</version>
</dependency>
<dependency>
<groupId>org.codehaus.castor</groupId>
<artifactId>castor-xml</artifactId>
<version>1.4.1</version>
</dependency>
<dependency>
<groupId>org.codehaus.castor</groupId>
<artifactId>castor-core</artifactId>
<version>1.4.1</version>
</dependency>
<dependency>
<groupId>org.codehaus.castor</groupId>
<artifactId>castor-jdo</artifactId>
<version>1.3.3-rc1</version>
</dependency>
<dependency>
<groupId>org.codehaus.castor</groupId>
<artifactId>castor-xml-schema</artifactId>
<version>1.4.1</version>
</dependency>
<dependency>
<groupId>org.springdoc</groupId>
<artifactId>springdoc-openapi-ui</artifactId>
<version>1.6.6</version>
</dependency>

<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-collections4</artifactId>
<version>4.4</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>3.12.0</version>
</dependency>

<!-- <dependency>-->
<!-- <groupId>${project.groupId}</groupId>-->
<!-- <artifactId>madie-rest-commons</artifactId>-->
<!-- </dependency>-->

<!-- <dependency>-->
<!-- <groupId>${project.groupId}</groupId>-->
<!-- <artifactId>madie-server-commons</artifactId>-->
<!-- </dependency>-->
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-maven-plugin</artifactId>
<executions>
<execution>
<id>build-info</id>
<goals>
<goal>build-info</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>pl.project13.maven</groupId>
<artifactId>git-commit-id-plugin</artifactId>
<version>4.0.3</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<source>11</source>
<target>11</target>
</configuration>
</plugin>
</plugins>
</build>
</project>
7 changes: 7 additions & 0 deletions src/main/java/com/google/gwt/user/client/rpc/IsSerializable.java
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
package com.google.gwt.user.client.rpc;

/**
* Marker interface indicating that a type is intended to be used with a
*/
public interface IsSerializable {
}
40 changes: 40 additions & 0 deletions src/main/java/gov/cms/mat/cql_elm_translation/CqlElmTranslationApplication.java
Original file line number Diff line number Diff line change
@@ -0,0 +1,40 @@
package gov.cms.mat.cql_elm_translation;

import gov.cms.mat.cql_elm_translation.config.security.SecurityFilter;
import lombok.extern.slf4j.Slf4j;
import org.springframework.boot.SpringApplication;
import org.springframework.boot.autoconfigure.SpringBootApplication;
import org.springframework.boot.web.servlet.FilterRegistrationBean;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Configuration;

import javax.annotation.PostConstruct;
import java.util.TimeZone;

@SpringBootApplication
@Configuration
@Slf4j
public class CqlElmTranslationApplication {

public static void main(String[] args) {
SpringApplication.run(CqlElmTranslationApplication.class, args);
}

/**
* Force UTC timezone locally.
*/
@PostConstruct
public void init() {
TimeZone.setDefault(TimeZone.getTimeZone("UTC"));
log.info("Set timezone to UTC.");
}

@Bean(name="FilterRegistrationBeanSecurityFilter")
public FilterRegistrationBean<SecurityFilter> securityFilter(SecurityFilter securityFilter){
FilterRegistrationBean<SecurityFilter> registrationBean
= new FilterRegistrationBean<>(securityFilter);
registrationBean.setFilter(securityFilter);
registrationBean.addUrlPatterns("/*");
return registrationBean;
}
}
13 changes: 13 additions & 0 deletions src/main/java/gov/cms/mat/cql_elm_translation/ServletInitializer.java
Original file line number Diff line number Diff line change
@@ -0,0 +1,13 @@
package gov.cms.mat.cql_elm_translation;

import org.springframework.boot.builder.SpringApplicationBuilder;
import org.springframework.boot.web.servlet.support.SpringBootServletInitializer;

public class ServletInitializer extends SpringBootServletInitializer {

@Override
protected SpringApplicationBuilder configure(SpringApplicationBuilder application) {
return application.sources(CqlElmTranslationApplication.class);
}

}
Loading

0 comments on commit b48bd37

Please sign in to comment.