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Merge pull request #377 from MoTrPAC/375_JZ_Project_Overivew_Exercise…
…_Benefits Connects to #374. Connects to #375. New components for exercise benefits and PASS1B-06 asasy-tissue mappings.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,191 @@ | ||
| import React from 'react'; | ||
| import { Helmet } from 'react-helmet'; | ||
| import PageTitle from '../lib/ui/pageTitle'; | ||
| import ExternalLink from '../lib/ui/externalLink'; | ||
|
|
||
| function DataDeposition() { | ||
| return ( | ||
| <div className="dataDepositionPage px-3 px-md-4 mb-3 container"> | ||
| <Helmet> | ||
| <html lang="en" /> | ||
| <title>Data Deposition at Public Repositories - MoTrPAC Data Hub</title> | ||
| </Helmet> | ||
| <PageTitle title="Data Deposition at Public Repositories" /> | ||
| <div className="data-deposition-content-container row mb-4"> | ||
| <div className="col-12"> | ||
| <p className="lead"> | ||
| Aside from being made available through the Data Hub portal, the MoTrPAC | ||
| animal study data have also been submitted to a number of public | ||
| repositories. Below is an overview of each dataset type and the public | ||
| repositories to which the data have been submitted. | ||
| </p> | ||
| {/* Epigenomics and transcriptomics data deposition table */} | ||
| <h4 className="mt-4">Epigenomics and Transcriptomics</h4> | ||
| <div className="table-responsive"> | ||
| <table className="table table-bordered"> | ||
| <thead> | ||
| <tr> | ||
| <th>Repository</th> | ||
| <th>Data type</th> | ||
| <th>Accession</th> | ||
| </tr> | ||
| </thead> | ||
| <tbody> | ||
| <tr> | ||
| <td> | ||
| <ExternalLink to="https://www.ncbi.nlm.nih.gov/sra" label="SRA" /> | ||
| </td> | ||
| <td>Raw data</td> | ||
| <td> | ||
| <ExternalLink to="https://www.ncbi.nlm.nih.gov/bioproject/PRJNA908279" label="PRJNA908279" /> | ||
| </td> | ||
| </tr> | ||
| <tr> | ||
| <td> | ||
| <ExternalLink to="https://www.ncbi.nlm.nih.gov/geo/" label="GEO" /> | ||
| </td> | ||
| <td> | ||
| Processed pipeline outputs (e.g., raw counts, merged peakset, bismark | ||
| coverage files) | ||
| </td> | ||
| <td> | ||
| <ExternalLink to="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242358" label="GSE242358" /> | ||
| </td> | ||
| </tr> | ||
| </tbody> | ||
| </table> | ||
| </div> | ||
| {/* Immunoassay data deposition table */} | ||
| <h4 className="mt-4">Immunoassays</h4> | ||
| <div className="table-responsive"> | ||
| <table className="table table-bordered"> | ||
| <thead> | ||
| <tr> | ||
| <th>Repository</th> | ||
| <th>Data type</th> | ||
| <th>Accession</th> | ||
| </tr> | ||
| </thead> | ||
| <tbody> | ||
| <tr> | ||
| <td> | ||
| <ExternalLink to="https://www.immport.org/home" label="IMMPORT" /> | ||
| </td> | ||
| <td>Readouts, results</td> | ||
| <td> | ||
| <ExternalLink to="https://immport.org/shared/study/SDY2193" label="SDY2193" /> | ||
| </td> | ||
| </tr> | ||
| </tbody> | ||
| </table> | ||
| </div> | ||
| {/* Metabolomics data deposition table */} | ||
| <h4 className="mt-4">Metabolomics (Targeted and Untargeted)</h4> | ||
| <div className="table-responsive"> | ||
| <table className="table table-bordered"> | ||
| <thead> | ||
| <tr> | ||
| <th>Repository</th> | ||
| <th>Data type</th> | ||
| <th>Project</th> | ||
| </tr> | ||
| </thead> | ||
| <tbody> | ||
| <tr> | ||
| <td> | ||
| <ExternalLink to="https://www.metabolomicsworkbench.org/" label="Metabolomics Workbench" /> | ||
| </td> | ||
| <td>Metabolomics raw + results files (identification and quantification)</td> | ||
| <td> | ||
| <ul className="list-unstyled"> | ||
| <li> | ||
| <ExternalLink to="https://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=PR001020" label="PR001020" /> | ||
| </li> | ||
| <li> | ||
| <ExternalLink to="http://dx.doi.org/10.21228/M8V97D" label="DOI: 10.21228/M8V97D" /> | ||
| </li> | ||
| </ul> | ||
| </td> | ||
| </tr> | ||
| </tbody> | ||
| </table> | ||
| </div> | ||
| {/* Proteomics data deposition table */} | ||
| <h4 className="mt-4">Proteomics</h4> | ||
| <div className="table-responsive"> | ||
| <table className="table table-bordered"> | ||
| <thead> | ||
| <tr> | ||
| <th>Repository</th> | ||
| <th>Data type</th> | ||
| <th>Metadata</th> | ||
| </tr> | ||
| </thead> | ||
| <tbody> | ||
| <tr> | ||
| <td> | ||
| <ExternalLink to="https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp" label="MassIVE" /> | ||
| </td> | ||
| <td> | ||
| <ul className="proteomics-data-submissions"> | ||
| <li> | ||
| <span> | ||
| Global Protein Abundance in Gastrocnemius, White Adipose, Cortex, | ||
| Lung, and Kidney | ||
| </span> | ||
| <span className="text-muted ml-1">(Dataset ID: MSV000092911)</span> | ||
| </li> | ||
| <li> | ||
| <span> | ||
| Protein Phosphorylation in Gastrocnemius, White Adipose Tissue, | ||
| Cortex, Lung, and Kidney | ||
| </span> | ||
| <span className="text-muted ml-1">(Dataset ID: MSV000092925)</span> | ||
| </li> | ||
| <li> | ||
| <span> | ||
| Global Protein Abundance in Heart and Liver | ||
| </span> | ||
| <span className="text-muted ml-1">(Dataset ID: MSV000092922)</span> | ||
| </li> | ||
| <li> | ||
| <span> | ||
| Protein Acetylation in Heart and Liver | ||
| </span> | ||
| <span className="text-muted ml-1">(Dataset ID: MSV000092924)</span> | ||
| </li> | ||
| <li> | ||
| <span> | ||
| Protein Phosphorylation in Heart and Liver | ||
| </span> | ||
| <span className="text-muted ml-1">(Dataset ID: MSV000092923)</span> | ||
| </li> | ||
| <li> | ||
| <span> | ||
| Protein Ubiquitination in Heart and Liver | ||
| </span> | ||
| <span className="text-muted ml-1">(Dataset ID: MSV000092931)</span> | ||
| </li> | ||
| </ul> | ||
| </td> | ||
| <td> | ||
| <ul className="list-unstyled"> | ||
| <li> | ||
| <ExternalLink to="https://drive.google.com/file/d/1d7etTfATHkATuOXM3SuLV7IwrpFJlYS0/view?usp=drive_link" label="Results files" /> | ||
| </li> | ||
| <li> | ||
| <ExternalLink to="https://docs.google.com/document/d/1Kj81cOGdDUCYos7FRwHx8bBxY6Hs7EINDJ4I7zflMOM/edit?usp=drive_link" label="Methods" /> | ||
| </li> | ||
| </ul> | ||
| </td> | ||
| </tr> | ||
| </tbody> | ||
| </table> | ||
| </div> | ||
| </div> | ||
| </div> | ||
| </div> | ||
| ); | ||
| } | ||
|
|
||
| export default DataDeposition; |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,40 @@ | ||
| import React from 'react'; | ||
| import { Helmet } from 'react-helmet'; | ||
| import PageTitle from '../lib/ui/pageTitle'; | ||
| import ExternalLink from '../lib/ui/externalLink'; | ||
|
|
||
| function License() { | ||
| return ( | ||
| <div className="licensePage px-3 px-md-4 mb-3 container"> | ||
| <Helmet> | ||
| <html lang="en" /> | ||
| <title>MoTrPAC Data License - MoTrPAC Data Hub</title> | ||
| </Helmet> | ||
| <PageTitle title="MoTrPAC Data License" /> | ||
| <div className="license-content-container row mb-4"> | ||
| <div className="col-12"> | ||
| <p className="lead"> | ||
| The data available through the MoTrPAC Data Hub portal is provided | ||
| under the Creative Commons Attribution 4.0 International License | ||
| (CC BY 4.0). This license allows users to use, share, adapt, distribute, | ||
| and reproduce the data in any medium or format, provided appropriate | ||
| credit is given to the original author(s) and the source, a link to the | ||
| Creative Commons license is included, and any modifications are clearly | ||
| indicated. | ||
| </p> | ||
| <p className="lead"> | ||
| To view the full terms of this license, please visit Creative Commons | ||
| Attribution 4.0 International License (CC BY 4.0) at | ||
| {' '} | ||
| <ExternalLink | ||
| to="https://creativecommons.org/licenses/by/4.0/" | ||
| label="https://creativecommons.org/licenses/by/4.0/" | ||
| /> | ||
| </p> | ||
| </div> | ||
| </div> | ||
| </div> | ||
| ); | ||
| } | ||
|
|
||
| export default License; |
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