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added example data pipeline TOML file
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Löffler, Hannes
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Jul 10, 2024
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# Input example for the REINVENT4 data pipeline | ||
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input_csv_file = "test.csv" | ||
smiles_column = "SMILES" | ||
separator = "\t" | ||
output_smiles_file = "processed.smi" | ||
num_procs = 1 | ||
chunk_size = 500 | ||
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[filter] | ||
elements = ["I", "O", "Cl", "N", "C", "F", "S", "Br"] | ||
transforms = ["standard"] | ||
min_heavy_atoms = 2 | ||
max_heavy_atoms = 90 | ||
max_mol_weight = 1200.0 | ||
min_carbons = 2 | ||
max_num_rings = 12 | ||
max_ring_size = 7 | ||
keep_stereo = true | ||
keep_isotope_molecules = true | ||
uncharge = true | ||
kekulize = false | ||
randomize_smiles = false | ||
report_errors = false |