Add ci workflow

.github/workflows/ci.yml

@@ -0,0 +1,29 @@
+name: nf-core CI
+# This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+
+jobs:
+  test:
+    name: Run pipeline with test data
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        NXF_VER:
+          - "23.04.0"
+          - "latest-everything"
+
+    steps:
+      - name: Check out pipeline code
+        uses: actions/checkout@v4
+
+      - name: Install Nextflow
+        uses: nf-core/setup-nextflow@v1
+        with:
+          version: "${{ matrix.NXF_VER }}"
+
+      - name: Run pipeline with test data
+        run: cd example && ./run.sh

example/run.sh

@@ -1,3 +1,3 @@
 #!/bin/bash
 
-nextflow run .. -resume -profile apptainer
+nextflow run .. -resume -profile docker