ExtendedCorrelationFunctions

Code and data for the paper "Extended correlation functions for spatial analysis of multiplex imaging data" by Bull et al (2023).

Code to run:

SyntheticDataset_I - Examples relating to synthetic dataset I
SyntheticDataset_II - Examples relating to synthetic dataset II
AnalyseROIPointCloud - All examples pertaining to the murine carcinoma, excluding applying the wPCF at pixel level
AnalyseROIatPixelLevel_WPCF - Examples applying the wPCF at pixel level

Name		Name	Last commit message	Last commit date
Latest commit History 5 Commits
figures		figures
.gitignore		.gitignore
AnalyseROIPointCloud.py		AnalyseROIPointCloud.py
AnalyseROIatPixelLevel_WPCF.py		AnalyseROIatPixelLevel_WPCF.py
Poisson_process.ipynb		Poisson_process.ipynb
Poisson_process.py		Poisson_process.py
README.md		README.md
ROI-0_MainText.csv		ROI-0_MainText.csv
ROI-0_MainText.pkl		ROI-0_MainText.pkl
ROI-1_Supplementary.csv		ROI-1_Supplementary.csv
ROI-2_Supplementary.csv		ROI-2_Supplementary.csv
ROI-3_Supplementary.csv		ROI-3_Supplementary.csv
SyntheticDataset1_functions.py		SyntheticDataset1_functions.py
SyntheticDataset2_functions.py		SyntheticDataset2_functions.py
SyntheticDataset_I.py		SyntheticDataset_I.py
SyntheticDataset_II.py		SyntheticDataset_II.py
TCM_Voronoi.ipynb		TCM_Voronoi.ipynb
helperFunctions.py		helperFunctions.py
smallestEnclosingCircle.py		smallestEnclosingCircle.py
voronoi_colocalisation_measures.ipynb		voronoi_colocalisation_measures.ipynb
voronoi_cross_pcf.ipynb		voronoi_cross_pcf.ipynb
voronoi_utils.py		voronoi_utils.py

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