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@NCI-GDC

Genomic Data Commons

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  1. gdc-workflow-overview gdc-workflow-overview Public

    Overview of GDC Harmonization Workflows

    27 9

  2. gdc-client gdc-client Public

    GDC Data Transfer Tool

    Python 148 40

  3. gdcdatamodel gdcdatamodel Public

    Translation layer between the GDC Data Dictionary and psqlgraph

    Python 28 3

  4. gdcdictionary gdcdictionary Public

    Data dictionary for the GDC

    Python 52 37

  5. psqlgraph psqlgraph Public

    Library for graph-like storage in postgresql using sqlalchemy

    Python 22 6

Repositories

Showing 10 of 84 repositories
  • gdc-frontend-framework Public
    NCI-GDC/gdc-frontend-framework’s past year of commit activity
    TypeScript 11 Apache-2.0 0 0 13 Updated Mar 7, 2025
  • mutect2-tool Public

    GDC GATK3 MuTect2 docker

    NCI-GDC/mutect2-tool’s past year of commit activity
    Python 0 Apache-2.0 2 1 2 Updated Mar 6, 2025
  • gdc-docs Public Forked from NCIP/gdc-docs

    Official repository for GDC User Guides in Markdown format

    NCI-GDC/gdc-docs’s past year of commit activity
    JavaScript 60 Apache-2.0 44 0 17 Updated Mar 6, 2025
  • indexd Public Forked from uc-cdis/indexd

    Index service server

    NCI-GDC/indexd’s past year of commit activity
    Python 3 Apache-2.0 20 0 12 Updated Mar 6, 2025
  • gdc-models Public

    Git repository centrally stores and serves GDC data models defined in static YAML files

    NCI-GDC/gdc-models’s past year of commit activity
    Python 3 1 4 1 Updated Mar 4, 2025
  • variant-filtration-cwl Public

    Workflows for filtering GDC VCFs

    NCI-GDC/variant-filtration-cwl’s past year of commit activity
    Common Workflow Language 1 Apache-2.0 2 0 1 Updated Mar 4, 2025
  • gdc-rnaseq-cwl Public

    GDC RNA-Seq STAR 2-Pass Workflow

    NCI-GDC/gdc-rnaseq-cwl’s past year of commit activity
    Common Workflow Language 2 Apache-2.0 8 0 2 Updated Feb 28, 2025
  • gdc-rnaseq-tool Public

    Utility scripts for RNA-seq workflows

    NCI-GDC/gdc-rnaseq-tool’s past year of commit activity
    Python 1 Apache-2.0 1 1 2 Updated Feb 27, 2025
  • bio_qcmetrics_tool Public

    Framework for serializing QC metrics into different formats for bioinformatics workflows

    NCI-GDC/bio_qcmetrics_tool’s past year of commit activity
    Python 0 Apache-2.0 0 0 1 Updated Feb 26, 2025
  • psqlgraph Public

    Library for graph-like storage in postgresql using sqlalchemy

    NCI-GDC/psqlgraph’s past year of commit activity
    Python 22 Apache-2.0 6 5 6 Updated Feb 25, 2025
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