new analysis of SFG and fixed master ER and RR files

NEFSC · Aug 29, 2024 · 605ade5 · 605ade5
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Showing 19 changed files with 1,757 additions and 1,215 deletions.
diff --git a/RAnalysis/.Rhistory b/RAnalysis/.Rhistory
diff --git a/RAnalysis/Output/ExcretionRates/F1/F1_ExcretionRates_master.csv b/RAnalysis/Output/ExcretionRates/F1/F1_ExcretionRates_master.csv
diff --git a/RAnalysis/Output/ExcretionRates/F2/F2_ExcretionRates_master.csv b/RAnalysis/Output/ExcretionRates/F2/F2_ExcretionRates_master.csv
diff --git a/RAnalysis/Output/ExcretionRates/allometric_scaling/F1_ExcretionScaling_bFactor_Length.pdf b/RAnalysis/Output/ExcretionRates/allometric_scaling/F1_ExcretionScaling_bFactor_Length.pdf
diff --git a/RAnalysis/Output/ExcretionRates/allometric_scaling/F1_ExcretionScaling_bFactor_TDW.pdf b/RAnalysis/Output/ExcretionRates/allometric_scaling/F1_ExcretionScaling_bFactor_TDW.pdf
diff --git a/RAnalysis/Output/ExcretionRates/allometric_scaling/F2_ExcretionScaling_bFactor_TDW.pdf b/RAnalysis/Output/ExcretionRates/allometric_scaling/F2_ExcretionScaling_bFactor_TDW.pdf
diff --git a/RAnalysis/Output/F1_RR_ER_Biodep_master.csv b/RAnalysis/Output/F1_RR_ER_Biodep_master.csv
diff --git a/RAnalysis/Output/F1_SFG.pdf b/RAnalysis/Output/F1_SFG.pdf
diff --git a/RAnalysis/Output/F1_SFG_Ttests.csv b/RAnalysis/Output/F1_SFG_Ttests.csv
@@ -0,0 +1,4 @@
+"","Age_DPF","model","ShapiroWilk","ResidNorm","Variance","HomogVar","DF.num","DF.denom","Tstat","P_val","SigDif","NA"
+"1",457,"Welchs T test, equal variance","0.187363386303451; 0.402678830850855","YES",0.999566685533955,"YES",10,"NA",0.597727143418312,0.281656172372266,"NO",NA
+"2",218,"Welchs T test, equal variance","0.877535089546364; 0.866122756088624","YES",0.986867583070608,"YES",14,"NA",0.960343567771751,0.176587898064402,"NO",NA
+"3",423,"Welchs T test, equal variance","0.488231286524157; 0.24476975843718","YES",0.613439414613892,"YES",11,"NA",0.502684362952846,0.312548945753343,"NO",NA
diff --git a/RAnalysis/Output/F2_RR_ER_Biodep_master.csv b/RAnalysis/Output/F2_RR_ER_Biodep_master.csv
diff --git a/RAnalysis/Output/F2_SFG.pdf b/RAnalysis/Output/F2_SFG.pdf
diff --git a/RAnalysis/Output/F2_SFG_Ttests_LOWvHIGH.csv b/RAnalysis/Output/F2_SFG_Ttests_LOWvHIGH.csv
@@ -0,0 +1,4 @@
+"","Age_DPF","model","ShapiroWilk","ResidNorm","Variance","HomogVar","DF.num","DF.denom","Tstat","P_val","SigDif","NA"
+"1",167,"Welchs T test, equal variance","0.55604701556613; 0.343966000912366","YES",0.866876709402682,"YES",11,"NA",0.177336659758588,0.43123360284407,"NO",NA
+"2",190,"Welchs T test, equal variance","0.690666020996191; 0.773497019847514","YES",0.372168470403576,"YES",11,"NA",3.49254124023126,0.00251799011594458,"YES",NA
+"3",222,"Welchs T test, equal variance","0.652340355188917; 0.994835598326444","YES",0.55603160473795,"YES",11,"NA",2.35300167853835,0.0191419699200076,"YES",NA
diff --git a/RAnalysis/Output/F2_SFG_Ttests_LOWvMOD.csv b/RAnalysis/Output/F2_SFG_Ttests_LOWvMOD.csv
@@ -0,0 +1,4 @@
+"","Age_DPF","model","ShapiroWilk","ResidNorm","Variance","HomogVar","DF.num","DF.denom","Tstat","P_val","SigDif","NA"
+"1",167,"Welchs T test, equal variance","0.345185630568082; 0.726284552007616","YES",0.237980207453517,"YES",12,"NA",-3.30062202336456,0.996833275903475,"NO",NA
+"2",190,"Welchs T test, equal variance","0.764212893893995; 0.536211479215861","YES",0.114138511331782,"YES",11,"NA",-3.74244809594468,0.998373842431402,"NO",NA
+"3",222,"Welchs T test, non-equal variance","0.994843163888152; 0.976604424546335","YES",0.0175917407228707,"NO",5.57606858486339,"NA",-2.52817208439676,0.976125420592078,"NO",NA
diff --git a/RAnalysis/Output/Respiration/F1/F1_RR_calc_master.csv b/RAnalysis/Output/Respiration/F1/F1_RR_calc_master.csv
diff --git a/RAnalysis/Output/Respiration/F2/F2_RR_calc_master.csv b/RAnalysis/Output/Respiration/F2/F2_RR_calc_master.csv
diff --git a/RAnalysis/Scripts/ExcretionRates_bfactor.R b/RAnalysis/Scripts/ExcretionRates_bfactor.R
diff --git a/RAnalysis/Scripts/F1_Phys/F1_Scope_for_Growth.Rmd b/RAnalysis/Scripts/F1_Phys/F1_Scope_for_Growth.Rmd
diff --git a/RAnalysis/Scripts/F2_Phys/F2_Scope_for_Growth.Rmd b/RAnalysis/Scripts/F2_Phys/F2_Scope_for_Growth.Rmd
diff --git a/RAnalysis/Scripts/RespirationRates_calc_bfactor.Rmd b/RAnalysis/Scripts/RespirationRates_calc_bfactor.Rmd