more edits, mostly links

Production/app.R

@@ -41,7 +41,7 @@ ui <- dashboardPage(
        ,
 #       # # # another tab content
        tabItem(tabName = "counts1415",
-               source('./scripts/counts1415.R', local = TRUE)$value, h4("In 2014 and 2015, the", tags$a(href="https://www.fisheries.noaa.gov/about/northeast-fisheries-science-center", target="_blank", rel="noopener noreferrer", "Northeast Fisheries Science Center"), "and the", tags$a(href="https://coastalstudies.org/", target="_blank", rel="noopener noreferrer", "Center for Coastal Studies"), "conducted monthly surveys of gray and harbor seals at roughly 30 haul-out sites in southeastern Massachusetts. Aerial surveys were flown monthly in a Skymaster aircraft at an altitude of approximately 230m on days with good visibility and within 2 hours of low tide, using a hand-held Canon 7D camera and fixed 300mm lens. This map displays the minimum counts and relative composition in the form of pie charts of both species by month throughout each year. This effort represents the only year-round survey conducted of seals in this region. For more information, see", tags$a(href="https://repository.library.noaa.gov/view/noaa/22053", "Pace et al, 2019"),".
+               source('./scripts/counts1415.R', local = TRUE)$value, h4("In 2014 and 2015, the", tags$a(href="https://www.fisheries.noaa.gov/about/northeast-fisheries-science-center", target="_blank", rel="noopener noreferrer", "Northeast Fisheries Science Center"), "and the", tags$a(href="https://coastalstudies.org/", target="_blank", rel="noopener noreferrer", "Center for Coastal Studies"), "conducted monthly surveys of gray and harbor seals at roughly 30 haul-out sites in southeastern Massachusetts. Aerial surveys were flown monthly in a Skymaster aircraft at an altitude of approximately 230m on days with good visibility and within 2 hours of low tide, using a hand-held Canon 7D camera and fixed 300mm lens. This map displays the minimum counts and relative composition in the form of pie charts of both species by month throughout each year. This effort represents the only year-round survey conducted of seals in this region. For more information, see", tags$a(href="https://repository.library.noaa.gov/view/noaa/22053",  target="_blank", rel="noopener noreferrer","Pace et al. 2019"),".
  Note that Muskeget Island is not included here because full surveys were not conducted during the pupping season as part of this project.    Drag the round handle of the time slider in the lower right, or animate by clicking on the time slider arrowhead.")     
        )
     )  

Production/data/DataDesc.csv

@@ -1,4 +1,4 @@
 Years,Frequency,Species,AgeClass,Location,Reference
 1983-2018,3-6 years,Harbor and Gray Seals,All with a focus on pups and breeding adults.,Coastal Maine,Gilbert et al. 2005; Sigourney et al. 2020
-2014-2015,variable,Harbor and Gray Seals,All (note: these surveys were outside pupping season so do not identify pups separately),Coastal Southeastern Massachusetts,Included within Pace et al. 2019
+2014-2015,monthly,Harbor and Gray Seals,All (note: these surveys were outside pupping season so do not identify pups separately),Coastal Southeastern Massachusetts,Included within Pace et al. 2019
 1988-2021,1-5 years,Gray Seals,Pups and breeding adults.,Coastal Massachusetts and Maine,"Wood et al. 2020, 2022"

Production/scripts/rectangleSelectHg.R

@@ -65,8 +65,8 @@ dashboardSidebar(disable = TRUE)
                          using hand-held or belly-mounted Canon camera systems. Ideally, surveys are flown after all pups are born and before they start leaving the colony, 
                          but in some years surveys may have been flown before or after this optimal window. Furthermore, not all colonies may have been surveyed each year 
                          due to logistics or if the site was not yet an established pupping colony. This map represents the minimum count of pups born on each colony from 2005-2021, 
-                         and if multiple flights were flown in a season, the maximum count of replicate surveys. For more information, see Wood et al.", tags$a(href="https://academic.oup.com/jmammal/article/101/1/121/56750962020", "2020,"), tags$a(href="https://repository.library.noaa.gov/view/noaa/46455", "2022.")), 
-                         h4("Use the bracket tool in the corner of this map and drag the corners to select rookeries (blue dots) of interest. 
+                         and if multiple flights were flown in a season, the maximum count of replicate surveys. For more information, see Wood et al.", tags$a(href="https://academic.oup.com/jmammal/article/101/1/121/56750962020", target="_blank", rel="noopener noreferrer", "2020,"), tags$a(href="https://repository.library.noaa.gov/view/noaa/46455", target="_blank", rel="noopener noreferrer", "2022.")), 
+                         h4("Use the bracket tool in the corner of this map and drag the corners to select rookeries (yellow dots) of interest. 
                         Or just use the filters in the datatable at left to select data."))
     ,
  #    

Production/scripts/rectangleSelectPv2.R

@@ -65,7 +65,7 @@ body <- dashboardBody(
   fluidRow(
 
     column(6,ltlf5, h4(style="text-align: justify;","The Northeast Fisheries Science Center has been conducting aerial surveys of harbor seals since 1983 to monitor the abundance of the population in U.S. waters. Surveys are flown during the pupping season when animals are concentrated on the coast of Maine and timed to coincide with peak pupping estimated to be around the end of May. Surveys are flown from a NOAA Twin Otter at 230m within 2 hours of low tide using a hand-held Canon camera and fixed 300mm lens. Close to 1,000 ledges are surveyed and grouped into bay units for analysis. This map displays the estimated abundance in the form of bar charts of both pups and non-pups by bay unit each year from 1983-2018. For more information, see ", 
-                       tags$a(href="https://onlinelibrary.wiley.com/doi/full/10.1111/mms.12873", "Sigourney et al. 2020")),  h4("Use the bracket tool in the corner of this map and drag the corners to select bay units of interest. Make sure to include the polygon center (yellow dot) in your selection.
+                       tags$a(href="https://onlinelibrary.wiley.com/doi/full/10.1111/mms.12873",  target="_blank", rel="noopener noreferrer","Sigourney et al. 2020")),  h4("Use the bracket tool in the corner of this map and drag the corners to select bay units of interest. Make sure to include the polygon center (yellow dot) in your selection.
                        Or just use the filters in the datatable at left to select data.")),
 
     column(6,DT1)