Merge pull request #331 from NHSDigital/AMB-2327-Fix-Pipeline-Issues

AMB-2327-fix-major-pipeline-issue
NHSDigital · Jan 30, 2025 · e570f39 · e570f39
2 parents 8f8efd9 + a927d36
commit e570f39
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Showing 6 changed files with 96 additions and 45 deletions.
diff --git a/.github/workflows/sonarcloud.yml b/.github/workflows/sonarcloud.yml
@@ -12,6 +12,8 @@ jobs:
     name: SonarCloud
     if: ${{ !contains(github.event.pull_request.labels.*.name, 'dependency') }}
     runs-on: ubuntu-latest
+
+
     steps:
       - uses: actions/checkout@v4
         with:
@@ -25,38 +27,76 @@ jobs:
           aws configure set aws_access_key_id $AWS_ACCESS_KEY_ID
           aws configure set aws_secret_access_key $AWS_SECRET_ACCESS_KEY
       
+      - name: Initialize Unit Test Failure Tracker
+        run: echo "false" > test_failed.txt
 
       - name: Run unittest with filenameprocessor-coverage
+        id: filenameprocessor
+        continue-on-error: true
         run: |
-          pip install poetry moto==4.2.11 coverage redis botocore==1.35.49 simplejson pandas freezegun
-          poetry run coverage run --source=filenameprocessor -m unittest discover -s filenameprocessor
+          pip install poetry==1.8.4 moto==4.2.11 coverage redis botocore==1.35.49 simplejson pandas freezegun
+          poetry run coverage run --source=filenameprocessor -m unittest discover -s filenameprocessor || echo "filenameprocessor tests failed" >> failed_tests.txt
           poetry run coverage xml -o sonarcloud-coverage-filenameprocessor-coverage.xml
+
       
+      - name: Run unittest with recordprocessor-coverage
+        id: recordprocessor
+        continue-on-error: true
+        run: |
+          poetry run coverage run --source=recordprocessor -m unittest discover -s recordprocessor || echo "recordprocessor tests failed" >> failed_tests.txt
+          poetry run coverage xml -o sonarcloud-coverage-recordprocessor-coverage.xml
+
+
       - name: Run unittest with recordforwarder-coverage
+        id: recordforwarder
+        continue-on-error: true
         run: |
-          poetry run coverage run --source=recordforwarder -m unittest discover -s recordforwarder
-          poetry run coverage xml -o sonarcloud-coverage-recordforwarder-coverage.xml 
+          poetry run coverage run --source=backend -m unittest discover -s backend/tests -p "*batch*.py" || echo "recordforwarder tests failed" >> failed_tests.txt
+          poetry run coverage xml -o sonarcloud-coverage-recordforwarder-coverage.xml
+
           
       - name: Run unittest with coverage-ack-lambda
+        id: acklambda
+        continue-on-error: true
         run: |
-          pip install poetry coverage moto==4.2.11 freezegun
-          poetry run coverage run --source=ack_backend -m unittest discover -s ack_backend
-          poetry run coverage xml -o sonarcloud-coverage-ack-lambda.xml        
-      
+          pip install poetry==1.8.4 coverage moto==4.2.11 freezegun
+          poetry run coverage run --source=ack_backend -m unittest discover -s ack_backend || echo "ack-lambda tests failed" >> failed_tests.txt
+          poetry run coverage xml -o sonarcloud-coverage-ack-lambda.xml
+
       - name: Run unittest with coverage-delta
+        id: delta
+        continue-on-error: true
         run: |
-          pip install poetry mypy-boto3-dynamodb==1.35.54 boto3==1.26.165 coverage botocore==1.29.165 jmespath==1.0.1 python-dateutil==2.9.0 urllib3==1.26.20 s3transfer==0.6.2 typing-extensions==4.12.2
-          poetry run coverage run --source=delta_backend -m unittest discover -s delta_backend
+          pip install poetry==1.8.4 mypy-boto3-dynamodb==1.35.54 boto3==1.26.165 coverage botocore==1.29.165 jmespath==1.0.1 python-dateutil==2.9.0 urllib3==1.26.20 s3transfer==0.6.2 typing-extensions==4.12.2
+          poetry run coverage run --source=delta_backend -m unittest discover -s delta_backend || echo "delta tests failed" >> failed_tests.txt
           poetry run coverage xml -o sonarcloud-coverage-delta.xml
       
       - name: Run unittest with coverage-fhir-api
+        id: fhirapi
+        continue-on-error: true
         run: |
-          pip install poetry moto==4.2.11 coverage redis botocore==1.35.49 simplejson responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90 python-stdnum==1.20
-          poetry run coverage run --source=backend -m unittest discover -s backend
+          pip install poetry==1.8.4 moto==4.2.11 coverage redis botocore==1.35.49 simplejson responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90 python-stdnum==1.20
+          poetry run coverage run --source=backend -m unittest discover -s backend || echo "fhir-api tests failed" >> failed_tests.txt
           poetry run coverage xml -o sonarcloud-coverage.xml
 
+      - name: Run Test Failure Summary
+        id: check_failure
+        run: |
+          if [ -s failed_tests.txt ]; then
+            echo "The following tests failed:"
+            cat failed_tests.txt
+
+            while IFS= read -r line; do
+              echo "##[error]Test Failures: $line"
+            done < failed_tests.txt
+            
+            exit 1
+          else
+            echo "All tests passed."
+          fi
+
       - name: SonarCloud Scan
-        uses: SonarSource/sonarcloud-github-action@master
+        uses: SonarSource/sonarqube-scan-action@master
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}  # Needed to get PR information, if any
-          SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}
+          SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}
diff --git a/backend/tests/test_forwarding_batch_lambda.py b/backend/tests/test_forwarding_batch_lambda.py
@@ -0,0 +1,12 @@
+"""Test for recordforwarder lambda"""
+
+import unittest
+
+## Remove this Test- this acting as a placeholder for actual record forwarder tests
+
+
+class Test_forward_lambda_handler(unittest.TestCase):
+    def test_name_length(self):
+        """Test that the length of 'recordforwarder' is 15."""
+        name = "recordforwarder"
+        self.assertEqual(len(name), 15)  # This test will pass
diff --git a/e2e/README.md b/e2e/README.md
@@ -19,7 +19,7 @@ To run all the tests you need to provide a `.env` file. The below table describe
 | APIGEE_USERNAME    | [email protected]                      | this value is needed inorder to authenticate with apigee                                      |
 | APIGEE_ENVIRONMENT | internal-dev                                | apigee environment                                                                            |
 | PROXY_NAME         | immunisation-fhir-api-pr-100                | this the proxy name that you want to target. You can find it in the apigee ui                 |
-| SERVICE_BASE_PATH  | immunisation-fhir-api-pr-100                | the base path for the proxy. This value can be found in overview section in the apigee ui     |
+| SERVICE_BASE_PATH  | immunisation-fhir-api/FHIR/R4-pr-100        | the base path for the proxy. This value can be found in overview section in the apigee ui     |
 | STATUS_API_KEY     | secret                                      | if you don't have this value then _status endpoint test will fail. You can ignore it          |
 | AWS_PROFILE        | apim-dev                                    | some operation may need to run aws cli. This value is used for aws authentication             |
 | AWS_DOMAIN_NAME    | https://pr-100.imms.dev.vds.platform.nhs.uk | this value points to our backend deployment. We use it to test mTLS. Ignore it in local tests |
@@ -40,7 +40,7 @@ Given your `.env` file:
 export APIGEE_USERNAME=<your-apigee-email>
 export APIGEE_ENVIRONMENT=internal-dev
 export PROXY_NAME=immunisation-fhir-api-pr-100
-export SERVICE_BASE_PATH=immunisation-fhir-api-pr-100
+export SERVICE_BASE_PATH=immunisation-fhir-api/FHIR/R4-pr-100
 ```
 
 You can run all tests using:

diff --git a/filenameprocessor/pyproject.toml b/filenameprocessor/pyproject.toml
@@ -1,32 +1,31 @@
 [tool.poetry]
-name        = "filenameprocessor"
-version     = "0.1.0"
+name = "filenameprocessor"
+version = "0.1.0"
 description = ""
-authors     = ["Your Name <[email protected]>"]
-readme      = "README.md"
-packages    = [{include = "src"}]
+readme = "README.md"
+authors = ["Your Name <[email protected]>"]
+packages = [{ include = "src" }]
 
 [tool.poetry.dependencies]
-python                  = "~3.10"
-"fhir.resources"        = "~7.0.2"
-boto3                   = "~1.26.90"
-boto3-stubs-lite        = {extras = ["dynamodb"], version = "~1.26.90"}
-aws-lambda-typing       = "~2.18.0"
-moto                    = "~4.2.11"
-requests                = "~2.31.0"
-responses               = "~0.24.1"
-pydantic                = "~1.10.13"
-pyjwt                   = "~2.8.0"
-cryptography            = "~42.0.4"
-cffi                    = "~1.16.0"
-jsonpath-ng             = "^1.6.0"
-simplejson              = "^3.19.2"
-structlog               = "^24.1.0"
-redis                   = "^5.1.1"
-coverage                = "7.6.1"
-freezegun               = "^1.5.1"
+python = "~3.10"
+"fhir.resources" = "~7.0.2"
+boto3 = "~1.26.90"
+boto3-stubs-lite = { extras = ["dynamodb"], version = "~1.26.90" }
+aws-lambda-typing = "~2.18.0"
+moto = "~4.2.11"
+requests = "~2.31.0"
+responses = "~0.24.1"
+pydantic = "~1.10.13"
+pyjwt = "~2.8.0"
+cryptography = "~42.0.4"
+cffi = "~1.16.0"
+jsonpath-ng = "^1.6.0"
+simplejson = "^3.19.2"
+structlog = "^24.1.0"
+redis = "^5.1.1"
+coverage = "7.6.1"
+freezegun = "^1.5.1"
 
 [build-system]
-requires      = ["poetry-core ~= 1.5.0"]
-
-build-backend = "poetry.core.masonry.api"
+requires = ["poetry-core >= 1.5.0"]
+build-backend = "poetry.core.masonry.api"
diff --git a/filenameprocessor/tests/test_audit_table.py b/filenameprocessor/tests/test_audit_table.py
@@ -80,7 +80,7 @@ def test_add_to_audit_table(self):
         expected_table_item_3 = {
             "message_id": message_id_3,
             "filename": file_key_1,
-            "status": "Processed",
+            "status": "Not processed - duplicate",
             "timestamp": created_at_formatted_string_3,
         }
 

diff --git a/sonar-project.properties b/sonar-project.properties
@@ -4,7 +4,7 @@ sonar.organization=nhsdigital
 sonar.host.url=https://sonarcloud.io
 sonar.python.version=3.11
 sonar.exclusions=**/e2e/**,**/temporary_sandbox/**,**/devtools/**,**/proxies/**,**/scripts/**,**/terraform/**,**/tests/**
-sonar.python.coverage.reportPaths=sonarcloud-coverage.xml,sonarcloud-coverage-delta.xml,sonarcloud-coverage-ack-lambda.xml,sonarcloud-coverage-filenameprocessor-coverage.xml,sonarcloud-coverage-recordforwarder-coverage.xml
+sonar.python.coverage.reportPaths=sonarcloud-coverage.xml,sonarcloud-coverage-delta.xml,sonarcloud-coverage-ack-lambda.xml,sonarcloud-coverage-filenameprocessor-coverage.xml,sonarcloud-coverage-recordforwarder-coverage.xml,sonarcloud-coverage-recordprocessor-coverage.xml
 sonar.issue.ignore.multicriteria=exclude_snomed_urls
 sonar.issue.ignore.multicriteria.exclude_snomed_urls.ruleKey=python:S5332
-sonar.issue.ignore.multicriteria.exclude_snomed_urls.pattern=**http://snomed\.info/sct**
+sonar.issue.ignore.multicriteria.exclude_snomed_urls.resourceKey=**http://snomed\.info/sct**