Fix/remove experimental ci (#25)

* fix references in transaction bundle in flag extension so they work with hapi starter

* remove ci

* tidy id's and updated postman collection

* update example page

* remove ci steps from pipeline

---------

Co-authored-by: Declan Kieran <[email protected]>

.github/workflows/publish.yml

@@ -37,15 +37,6 @@ jobs:
       - name: Install Graphvix
         run: sudo apt install graphviz
 
-      - name: Run FHIR server (TODO - load package from vars and validate - maybe just let the publisher handle that...)
-        run: docker run -d -p 8080:8080 -e hapi.fhir.daoconfig_client_id_strategy=UUID -e hapi.fhir.client_id_strategy=ANY hapiproject/hapi:latest
-
-      - name: Sleep to give server time to start
-        run: sleep 90
-
-      - name: Convert FSH, load examples and run queries to be added to IG
-        run: ./scripts/run-examples.sh
-
       - name: Build IG
         run: ./_genonce.sh ${{ vars.VALIDATOR_OFFLINE }}
 

input/fsh/examples/AddCPISRecordTransactionExample1-bundle.fsh

@@ -0,0 +1,25 @@
+Instance: AddCPISRecordTransactionExample1
+InstanceOf: Bundle
+Title: "CPIS Example of adding a record with a Transaction"
+Usage: #example
+* type = #transaction
+* entry[0].fullUrl = "Patient/PatientExample1"
+* entry[=].resource = PatientExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Patient/PatientExample1"
+* entry[+].fullUrl = "Consent/CPISConsentExample1"
+* entry[=].resource = CPISConsentExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Consent/CPISConsentExample1"
+* entry[+].fullUrl = "Condition/CPISConditionExample1"
+* entry[=].resource = CPISConditionExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Condition/CPISConditionExample1"
+* entry[+].fullUrl = "Flag/CPISPatientFlagExample1"
+* entry[=].resource = CPISPatientFlagExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Flag/CPISPatientFlagExample1"
+* entry[+].fullUrl = "Flag/CPISFlagExample1"
+* entry[=].resource = CPISFlagExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Flag/CPISFlagExample1"

input/fsh/examples/AddFGMRecordTransactionExample1-bundle.fsh

@@ -0,0 +1,25 @@
+Instance: AddFGMRecordTransactionExample1
+InstanceOf: Bundle
+Title: "FGM Example of adding a record with a Transaction"
+Usage: #example
+* type = #transaction
+* entry[0].fullUrl = "Patient/PatientExample1"
+* entry[=].resource = PatientExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Patient/PatientExample1"
+* entry[+].fullUrl = "Consent/FGMConsentExample1"
+* entry[=].resource = FGMConsentExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Consent/FGMConsentExample1"
+* entry[+].fullUrl = "Condition/FGMConditionExample1"
+* entry[=].resource = FGMConditionExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Condition/FGMConditionExample1"
+* entry[+].fullUrl = "Flag/FGMPatientFlagExample1"
+* entry[=].resource = FGMPatientFlagExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Flag/FGMPatientFlagExample1"
+* entry[+].fullUrl = "Flag/FGMFlagExample1"
+* entry[=].resource = FGMFlagExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Flag/FGMFlagExample1"

input/fsh/examples/AddRARecordTransactionExample1-bundle.fsh

@@ -0,0 +1,25 @@
+Instance: AddRARecordTransactionExample1
+InstanceOf: Bundle
+Title: "RA Example of adding a record with a Transaction"
+Usage: #example
+* type = #transaction
+* entry[0].fullUrl = "Patient/PatientExample1"
+* entry[=].resource = PatientExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Patient/PatientExample1"
+* entry[+].fullUrl = "Consent/RAConsentExample1"
+* entry[=].resource = RAConsentExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Consent/RAConsentExample1"
+* entry[+].fullUrl = "Condition/RAConditionExample1"
+* entry[=].resource = RAConditionExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Condition/RAConditionExample1"
+* entry[+].fullUrl = "Flag/RAPatientFlagExample1"
+* entry[=].resource = RAPatientFlagExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Flag/RAPatientFlagExample1"
+* entry[+].fullUrl = "Flag/RAFlagExample1"
+* entry[=].resource = RAFlagExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Flag/RAFlagExample1"

input/fsh/examples/AddRARecordTransactionExample2-bundle.fsh

@@ -0,0 +1,33 @@
+Instance: AddRARecordTransactionExample2
+InstanceOf: Bundle
+Title: "RA Example of idempotent update of a record with a Transaction"
+Usage: #example
+* type = #transaction
+* entry[0].fullUrl = "Patient/PatientExample1"
+* entry[=].resource = PatientExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Patient/PatientExample1"
+* entry[+].fullUrl = "Consent/RAConsentExample1"
+* entry[=].resource = RAConsentExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Consent/RAConsentExample1"
+* entry[+].fullUrl = "Condition/RAConditionExample1"
+* entry[=].resource = RAConditionExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Condition/RAConditionExample1"
+* entry[+].fullUrl = "Flag/RAPatientFlagExample1"
+* entry[=].resource = RAPatientFlagExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Flag/RAPatientFlagExample1"
+* entry[+].fullUrl = "Flag/RAFlagExample1"
+* entry[=].resource = RAFlagExample1
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Flag/RAFlagExample1"
+* entry[+].fullUrl = "Condition/RAConditionExample2"
+* entry[=].resource = RAConditionExample2
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Condition/RAConditionExample2"
+* entry[+].fullUrl = "Flag/RAFlagExample2"
+* entry[=].resource = RAFlagExample2
+* entry[=].request.method = #PUT
+* entry[=].request.url = "Flag/RAFlagExample2"

input/pagecontent/basic-query-examples.md

@@ -0,0 +1,31 @@
+### Summary
+
+The [HAPI FHIR Starter Server](https://github.com/hapifhir/hapi-fhir-jpaserver-starter) is used to demostrate some basic REST capabilities in FHIR using examples within this implementation guide.
+
+#### Docker invocation of the HAPI Starter Project
+
+This command starts the server on port 8080 and use UUID (as opposed to sequential numbers) for resource ID's.  For more options see this [config](https://github.com/hapifhir/hapi-fhir-jpaserver-starter/blob/master/src/main/resources/application.yaml).
+
+```
+docker run -p 8080:8080 -e hapi.fhir.daoconfig_client_id_strategy=UUID -e hapi.fhir.client_id_strategy=ANY hapiproject/hapi:latest
+```
+
+To pull the latest image, run
+
+```
+docker pull hapiproject/hapi:latest
+```
+
+#### Swagger
+
+The HAPI starter project provides an OAS interface to the supported FHIR API.  Assuming the above docker command is used, this would be available at
+
+```
+http://localhost:8080/fhir/swagger-ui/index.html
+```
+
+#### Postman
+
+Some transaction and basic query examples are available in a [Postman collection](assets/postman/postman_collection.json).
+
+**NOTE:** Posting the SearchParameters first to the [HAPI FHIR Starter Server](https://github.com/hapifhir/hapi-fhir-jpaserver-starter) will allow them to index/load quicker so they work in the query examples.