Merge srw-containers into main

.github/workflows/build-push-containers._yml

@@ -7,7 +7,7 @@ name:  Build and Push Images (Docker)
 on:
   # run it on push to the default repository branch
   push:
-    branches: [main]
+    branches: [feature/oneapi]
   # run it during pull request
   pull_request:
 
@@ -27,42 +27,60 @@ jobs:
       - name: Login to DockerHub Registry
         run: echo ${{ secrets.DOCKERHUB_PASSWORD }} | docker login -u ${{ secrets.DOCKERHUB_USERNAME }} --password-stdin    
 
-      - name: docker build tag noaaepic/ubuntu20.04-hpc-stack
+      - name: docker build tag noaaepic/ubuntu20.04-base
         run: | 
          echo ${{ steps.abc.outputs.all }}
           for file in ${{ steps.abc.outputs.all }}; do
-            if [[ $file == *"ubuntu20.04-gnu9.3-hpc-stack.docker"* ]]; then
-                echo "docker build tag noaaepic/ubuntu20.04-hpc-stack"
-                docker build -t noaaepic/ubuntu20.04-hpc-stack:0.1 -f ./docker/ubuntu20.04-gnu9.3-hpc-stack.docker .
+            if [[ $file == *"Dockerfile.ubuntu20.04-base"* ]]; then
+                echo "docker build tag noaaepic/ubuntu20.04-base"
+                docker build -t noaaepic/ubuntu20.04-base:1.0 -f ./Docker/Dockerfile.ubuntu20.04-base .
             fi           
           done
-      - name: docker push tag noaaepic/ubuntu20.04-hpc-stack
+      - name: docker push tag noaaepic/ubuntu20.04-base
         run: | 
           echo ${{ steps.abc.outputs.all }}
           for file in ${{ steps.abc.outputs.all }}; do
-            if [[ $file == *"ubuntu20.04-gnu9.3-hpc-stack.docker"* ]]; then
-                echo "docker push tag noaaepic/ubuntu20.04-hpc-stack:0.1"
-                docker push noaaepic/ubuntu20.04-hpc-stack:0.1
+            if [[ $file == *"Dockerfile.ubuntu20.04-base"* ]]; then
+                echo "docker push tag noaaepic/ubuntu20.04-base:1.0"
+                docker push noaaepic/ubuntu20.04-base:1.0
             fi
           done
-      - name: docker build tag noaaepic/ubuntu20.04-epic-srwapp
+      - name: docker build tag noaaepic/ubuntu20.04-spack
+        run: | 
+         echo ${{ steps.abc.outputs.all }}
+          for file in ${{ steps.abc.outputs.all }}; do
+            if [[ $file == *"Dockerfile.ubuntu20.04-spack"* ]]; then
+                echo "docker build tag noaaepic/ubuntu20.04-spack"
+                docker build -t noaaepic/ubuntu20.04-spack:1.0 -f ./Docker/Dockerfile.ubuntu20.04-spack .
+            fi           
+          done
+      - name: docker push tag noaaepic/ubuntu20.04-spack
         run: | 
           echo ${{ steps.abc.outputs.all }}
           for file in ${{ steps.abc.outputs.all }}; do
-            if [[ $file == *"ubuntu20.04-ufs-srwapp.docker"* ]]; then
-                echo "docker build tag noaaepic/ubuntu20.04-epic-srwapp"
-                docker build -t noaaepic/ubuntu20.04-epic-srwapp:1.0 -f ./docker/ubuntu20.04-ufs-srwapp.docker .
-            fi            
+            if [[ $file == *"Dockerfile.ubuntu20.04-spack"* ]]; then
+                echo "docker push tag noaaepic/ubuntu20.04-spack:1.0"
+                docker push noaaepic/ubuntu20.04-spack:1.0
+            fi
           done
-      - name: docker push tag noaaepic/ubuntu20.04-epic-srwapp
+      - name: docker build tag noaaepic/ubuntu20.04-intel22-ufs-srwapp
+        run: | 
+         echo ${{ steps.abc.outputs.all }}
+          for file in ${{ steps.abc.outputs.all }}; do
+            if [[ $file == *"Dockerfile.ubuntu20.04-intel22-ufs-srwapp"* ]]; then
+                echo "docker build tag noaaepic/ubuntu20.04-intel22-ufs-srwapp"
+                docker build -t noaaepic/ubuntu20.04-intel22-ufs-srwapp:1.0 -f ./Docker/Dockerfile.ubuntu20.04-intel22-ufs-srwapp .
+            fi           
+          done
+      - name: docker push tag noaaepic/ubuntu20.04-intel22-ufs-srwapp
         run: | 
           echo ${{ steps.abc.outputs.all }}
           for file in ${{ steps.abc.outputs.all }}; do
-            if [[ $file == *"ubuntu20.04-ufs-srwapp.docker"* ]]; then
-                echo "docker push tag noaaepic/ubuntu20.04-epic-srwapp:1.0"
-                docker push noaaepic/ubuntu20.04-epic-srwapp:1.0
-            fi            
-          done     
+            if [[ $file == *"Dockerfile.ubuntu20.04-intel22-ufs-srwapp"* ]]; then
+                echo "docker push tag noaaepic/ubuntu20.04-intel22-ufs-srwapp:1.0"
+                docker push noaaepic/ubuntu20.04-intel22-ufs-srwapp:1.0
+            fi
+          done
 
       - name: docker logout
         run: |

Docker/Dockerfile.ubuntu20.04-hpc-intel

@@ -0,0 +1,111 @@
+# Copyright (c) 2020-2021 Intel Corporation.
+# SPDX-License-Identifier: BSD-3-Clause
+FROM ubuntu:20.04 as build
+
+RUN mkdir -p /opt/build && mkdir -p /opt/dist
+RUN apt-get update && \
+  DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
+    ca-certificates curl && \
+  rm -rf /var/lib/apt/lists/*
+
+# install cmake
+RUN cd /opt/build && \
+    curl -LO https://github.com/Kitware/CMake/releases/download/v3.22.1/cmake-3.22.1-linux-x86_64.sh && \
+    mkdir -p /opt/dist//usr/local && \
+    /bin/bash cmake-3.22.1-linux-x86_64.sh --prefix=/opt/dist//usr/local --skip-license
+
+
+
+
+# cleanup
+RUN rm -rf /opt/dist/usr/local/include && \
+    rm -rf /opt/dist/usr/local/lib/pkgconfig && \
+    find /opt/dist -name "*.a" -exec rm -f {} \; || echo ""
+RUN rm -rf /opt/dist/usr/local/share/doc
+RUN rm -rf /opt/dist/usr/local/share/man
+
+FROM ubuntu:20.04
+COPY third-party-programs.txt /
+RUN apt-get update && \
+  DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
+    curl ca-certificates gpg-agent software-properties-common && \
+  rm -rf /var/lib/apt/lists/*
+# repository to install Intel(R) oneAPI Libraries
+RUN curl -fsSL https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS-2023.PUB | apt-key add -
+RUN echo "deb [trusted=yes] https://apt.repos.intel.com/oneapi all main " > /etc/apt/sources.list.d/oneAPI.list
+ RUN apt-get update && \
+  DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
+    curl ca-certificates gpg-agent software-properties-common && \
+  rm -rf /var/lib/apt/lists/*
+# repository to install Intel(R) GPU drivers
+RUN curl -fsSL https://repositories.intel.com/graphics/intel-graphics.key | apt-key add -
+RUN echo "deb [trusted=yes arch=amd64] https://repositories.intel.com/graphics/ubuntu bionic main" > /etc/apt/sources.list.d/intel-graphics.list
+ RUN apt-get update && \
+  DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
+    ca-certificates build-essential pkg-config gnupg libarchive13 intel-basekit-getting-started intel-oneapi-advisor intel-oneapi-ccl-devel intel-oneapi-common-licensing intel-oneapi-common-vars intel-oneapi-compiler-dpcpp-cpp intel-oneapi-dal-devel intel-oneapi-dev-utilities intel-oneapi-dnnl-devel intel-oneapi-dpcpp-debugger intel-oneapi-ipp-devel intel-oneapi-ippcp-devel intel-oneapi-libdpstd-devel intel-oneapi-mkl-devel intel-oneapi-onevpl-devel intel-oneapi-python intel-oneapi-tbb-devel intel-oneapi-vtune intel-opencl intel-level-zero-gpu level-zero level-zero-devel openssh-server openssh-client intel-hpckit-getting-started intel-oneapi-clck intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic intel-oneapi-compiler-fortran intel-oneapi-inspector intel-oneapi-itac intel-oneapi-mpi-devel  && \
+  rm -rf /var/lib/apt/lists/*
+
+COPY --from=build /opt/dist /
+
+ENV LANG=C.UTF-8
+
+ENV ACL_BOARD_VENDOR_PATH='/opt/Intel/OpenCLFPGA/oneAPI/Boards'
+ENV ADVISOR_2022_DIR='/opt/intel/oneapi/advisor/2022.0.0'
+ENV APM='/opt/intel/oneapi/advisor/2022.0.0/perfmodels'
+ENV CCL_CONFIGURATION='cpu_gpu_dpcpp'
+ENV CCL_ROOT='/opt/intel/oneapi/ccl/2021.5.1'
+ENV CLASSPATH='/opt/intel/oneapi/mpi/2021.5.1//lib/mpi.jar:/opt/intel/oneapi/dal/2021.5.3/lib/onedal.jar'
+ENV CLCK_ROOT='/opt/intel/oneapi/clck/2021.5.0'
+ENV CMAKE_PREFIX_PATH='/opt/intel/oneapi/vpl/2022.0.0:/opt/intel/oneapi/tbb/2021.5.1/env/..:/opt/intel/oneapi/dal/2021.5.3:/opt/intel/oneapi/compiler/2022.0.2/linux/IntelDPCPP'
+ENV CMPLR_ROOT='/opt/intel/oneapi/compiler/2022.0.2'
+ENV CONDA_DEFAULT_ENV='intelpython-python3.9'
+ENV CONDA_EXE='/opt/intel/oneapi/intelpython/latest/bin/conda'
+ENV CONDA_PREFIX='/opt/intel/oneapi/intelpython/latest'
+ENV CONDA_PROMPT_MODIFIER='(intelpython-python3.9) '
+ENV CONDA_PYTHON_EXE='/opt/intel/oneapi/intelpython/latest/bin/python'
+ENV CONDA_SHLVL='1'
+ENV CPATH='/opt/intel/oneapi/vpl/2022.0.0/include:/opt/intel/oneapi/tbb/2021.5.1/env/../include:/opt/intel/oneapi/mpi/2021.5.1//include:/opt/intel/oneapi/mkl/2022.0.2/include:/opt/intel/oneapi/ippcp/2021.5.1/include:/opt/intel/oneapi/ipp/2021.5.2/include:/opt/intel/oneapi/dpl/2021.6.0/linux/include:/opt/intel/oneapi/dnnl/2022.0.2/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dev-utilities/2021.5.2/include:/opt/intel/oneapi/dal/2021.5.3/include:/opt/intel/oneapi/ccl/2021.5.1/include/cpu_gpu_dpcpp'
+ENV CPLUS_INCLUDE_PATH='/opt/intel/oneapi/clck/2021.5.0/include'
+ENV DAALROOT='/opt/intel/oneapi/dal/2021.5.3'
+ENV DALROOT='/opt/intel/oneapi/dal/2021.5.3'
+ENV DAL_MAJOR_BINARY='1'
+ENV DAL_MINOR_BINARY='1'
+ENV DNNLROOT='/opt/intel/oneapi/dnnl/2022.0.2/cpu_dpcpp_gpu_dpcpp'
+ENV DPL_ROOT='/opt/intel/oneapi/dpl/2021.6.0'
+ENV FI_PROVIDER_PATH='/opt/intel/oneapi/mpi/2021.5.1//libfabric/lib/prov:/usr/lib64/libfabric'
+ENV FPGA_VARS_ARGS=''
+ENV FPGA_VARS_DIR='/opt/intel/oneapi/compiler/2022.0.2/linux/lib/oclfpga'
+ENV GDB_INFO='/opt/intel/oneapi/debugger/2021.5.0/documentation/info/'
+ENV INFOPATH='/opt/intel/oneapi/debugger/2021.5.0/gdb/intel64/lib'
+ENV INSPECTOR_2022_DIR='/opt/intel/oneapi/inspector/2022.0.0'
+ENV INTELFPGAOCLSDKROOT='/opt/intel/oneapi/compiler/2022.0.2/linux/lib/oclfpga'
+ENV INTEL_LICENSE_FILE='/opt/intel/licenses:/root/intel/licenses:/opt/intel/oneapi/clck/2021.5.0/licensing:/opt/intel/licenses:/root/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses'
+ENV INTEL_PYTHONHOME='/opt/intel/oneapi/debugger/2021.5.0/dep'
+ENV IPPCP_TARGET_ARCH='intel64'
+ENV IPPCRYPTOROOT='/opt/intel/oneapi/ippcp/2021.5.1'
+ENV IPPROOT='/opt/intel/oneapi/ipp/2021.5.2'
+ENV IPP_TARGET_ARCH='intel64'
+ENV I_MPI_ROOT='/opt/intel/oneapi/mpi/2021.5.1'
+ENV LD_LIBRARY_PATH='/opt/intel/oneapi/vpl/2022.0.0/lib:/opt/intel/oneapi/tbb/2021.5.1/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.5.1//libfabric/lib:/opt/intel/oneapi/mpi/2021.5.1//lib/release:/opt/intel/oneapi/mpi/2021.5.1//lib:/opt/intel/oneapi/mkl/2022.0.2/lib/intel64:/opt/intel/oneapi/itac/2021.5.0/slib:/opt/intel/oneapi/ippcp/2021.5.1/lib/intel64:/opt/intel/oneapi/ipp/2021.5.2/lib/intel64:/opt/intel/oneapi/dnnl/2022.0.2/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.5.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.5.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.5.0/dep/lib:/opt/intel/oneapi/dal/2021.5.3/lib/intel64:/opt/intel/oneapi/compiler/2022.0.2/linux/lib:/opt/intel/oneapi/compiler/2022.0.2/linux/lib/x64:/opt/intel/oneapi/compiler/2022.0.2/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.0.2/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.5.1/lib/cpu_gpu_dpcpp'
+ENV LIBRARY_PATH='/opt/intel/oneapi/vpl/2022.0.0/lib:/opt/intel/oneapi/tbb/2021.5.1/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.5.1//libfabric/lib:/opt/intel/oneapi/mpi/2021.5.1//lib/release:/opt/intel/oneapi/mpi/2021.5.1//lib:/opt/intel/oneapi/mkl/2022.0.2/lib/intel64:/opt/intel/oneapi/ippcp/2021.5.1/lib/intel64:/opt/intel/oneapi/ipp/2021.5.2/lib/intel64:/opt/intel/oneapi/dnnl/2022.0.2/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.5.3/lib/intel64:/opt/intel/oneapi/compiler/2022.0.2/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.0.2/linux/lib:/opt/intel/oneapi/clck/2021.5.0/lib/intel64:/opt/intel/oneapi/ccl/2021.5.1/lib/cpu_gpu_dpcpp'
+ENV MANPATH='/opt/intel/oneapi/mpi/2021.5.1/man:/opt/intel/oneapi/itac/2021.5.0/man:/opt/intel/oneapi/debugger/2021.5.0/documentation/man:/opt/intel/oneapi/compiler/2022.0.2/documentation/en/man/common:/opt/intel/oneapi/clck/2021.5.0/man::'
+ENV MKLROOT='/opt/intel/oneapi/mkl/2022.0.2'
+ENV NLSPATH='/opt/intel/oneapi/mkl/2022.0.2/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.0.2/linux/compiler/lib/intel64_lin/locale/%l_%t/%N'
+ENV OCL_ICD_FILENAMES='libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.0.2/linux/lib/x64/libintelocl.so'
+ENV ONEAPI_ROOT='/opt/intel/oneapi'
+ENV PATH='/opt/intel/oneapi/vtune/2022.1.0/bin64:/opt/intel/oneapi/vpl/2022.0.0/bin:/opt/intel/oneapi/mpi/2021.5.1//libfabric/bin:/opt/intel/oneapi/mpi/2021.5.1//bin:/opt/intel/oneapi/mkl/2022.0.2/bin/intel64:/opt/intel/oneapi/itac/2021.5.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.0.0/bin64:/opt/intel/oneapi/dev-utilities/2021.5.2/bin:/opt/intel/oneapi/debugger/2021.5.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.0.2/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.0.2/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.0.2/linux/bin:/opt/intel/oneapi/clck/2021.5.0/bin/intel64:/opt/intel/oneapi/advisor/2022.0.0/bin64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin'
+ENV PKG_CONFIG_PATH='/opt/intel/oneapi/vtune/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.0.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.5.1/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.5.1/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.0.2/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.5.1/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.0.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.0.2/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.5.3/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.0.2/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.5.1/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.0.0/include/pkgconfig/lib64:'
+ENV PYTHONPATH='/opt/intel/oneapi/advisor/2022.0.0/pythonapi'
+ENV SETVARS_COMPLETED='1'
+ENV TBBROOT='/opt/intel/oneapi/tbb/2021.5.1/env/..'
+ENV VTUNE_PROFILER_2022_DIR='/opt/intel/oneapi/vtune/2022.1.0'
+ENV VT_ADD_LIBS='-ldwarf -lelf -lvtunwind -lm -lpthread'
+ENV VT_LIB_DIR='/opt/intel/oneapi/itac/2021.5.0/lib'
+ENV VT_MPI='impi4'
+ENV VT_ROOT='/opt/intel/oneapi/itac/2021.5.0'
+ENV VT_SLIB_DIR='/opt/intel/oneapi/itac/2021.5.0/slib'
+ENV _CE_CONDA=''
+ENV _CE_M=''
+RUN echo "dash dash/sh boolean false" | debconf-set-selections
+RUN DEBIAN_FRONTEND=noninteractive dpkg-reconfigure dash
+