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{"config":{"lang":["en"],"separator":"[\\s\\-]+","pipeline":["stopWordFilter"]},"docs":[{"location":"","title":"Neuroimaging Processing and Analytics Core","text":""},{"location":"#mission","title":"Mission","text":"<p>NPAC is an interdisciplinary core sponsoring software infrastructure, development, and education for human brain imaging. Our focus is on open and accessible tools for reproducible pipelines, embracing standardization across MR processing.</p>"},{"location":"#about","title":"About","text":"<p>We are part of the MR Research Center at University of Pittsburgh, emerging from the MRRC, ARGO/Tetra, and the LNCD.</p> <p>NPAC is a young initiative and is excited to meet community needs. Please reach out to Will Foran for MR software/processing related questions.</p> <p>Find more on sidebar, our current projects, and our github. Find ways to stay in touch here.</p>"},{"location":"communications/","title":"Communications","text":"<p>You can find individual email and links on the people page.</p>"},{"location":"communications/#team-chat","title":"Team Chat","text":"<p>The NPAC zulip team chat is publicly readable.</p> <p>To post, follow this link to create a guest account.</p>"},{"location":"communications/#email-lists","title":"Email Lists","text":"<ul> <li>R2Prime, neuromalnin</li> </ul>"},{"location":"data-ops/","title":"Data-Ops","text":"<p>Common conventions</p> <ul> <li>YODA</li> <li>Version control (git, fossil, pijul)<ul> <li>atomic</li> <li>conventional commits (vs. gitmoji)</li> <li>pre-commit hooks<ul> <li>lint/fmt</li> <li>test</li> </ul> </li> </ul> </li> <li>Container-ize (docker/podman/singularity, nix/guix)</li> <li>Provenance tracking</li> <li>Automate</li> </ul>"},{"location":"people/","title":"People","text":"Finn Helmet Sydney Will Foran Director"},{"location":"projects/","title":"Projects","text":"<ul> <li><code>awesome-neuroimaging</code></li> <li><code>tat2</code></li> <li>MRSI<ul> <li><code>QPASA slice altas positioning</code></li> <li><code>MRSI Coordinate Placer</code></li> </ul> </li> <li>flywheel</li> </ul>"},{"location":"projects/#unpublished","title":"Unpublished","text":"<p>Projects pending approval of the collaborator </p> <ul> <li>Neuromelanin</li> <li>R2prime</li> </ul>"},{"location":"projects/#deprecated","title":"Deprecated","text":"<ul> <li><code>dcmdir_bids</code>, see heudiconv for a more general BIDS converter </li> <li><code>fmri_processing</code>, see fmriprep + xcp-d</li> </ul>"},{"location":"provenance/","title":"Provenance","text":""},{"location":"provenance/#tools","title":"Tools","text":"<ul> <li>datalad (git-annex)</li> <li>dvc</li> <li>dud</li> </ul>"},{"location":"resources/","title":"Resources","text":"<p>See our \"awesome-list\" 1 awesome-neuroimaging for neuroimaging specific suits, software, and tools</p>"},{"location":"resources/#university-services","title":"University services","text":"<ul> <li>CRC - pitt provided HPC </li> <li>REDCap - CTSI hosted survey (and more) software</li> <li>OAC - the office of academic computing offers the department of psychiatry database development and hosting, survey collection with custom web forms or text messaging, data/backup management, and more.</li> <li>Pitt EWI - Enterprise Web Infrastructure provides university hosted php (e.g. wordpress, dokuwiki) or static websites</li> </ul> <ol> <li> <p>curated lists with a lose specification: sindresorhus/awesome \u21a9</p> </li> </ol>"}]} | ||
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