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Co-authored-by: Giulia Crocioni <[email protected]>

docs/concepts/bigscape.md

@@ -1,5 +1,5 @@
 NPLinker can run BigScape automatically if the `bigscape` directory does not exist in the working directory.
-Both BigScape version 1 and 2 are supported.
+Both version 1 and version 2 of BigScape are supported.
 
 See the [configuration template][configuration-template] for how to set parameters for running BigScape.
 

src/nplinker/data/nplinker.toml

@@ -46,13 +46,13 @@ version = "3.1"
 # Version of BiG-SCAPE to run. Make sure to change the parameters property below as well
 # when changing versions.
 version = 1
-# Required bigscape parameters.
+# Required BiG-SCAPE parameters.
 # --------------
 # For version 1:
 # -------------
 # Required parameters are: `--mix`, `--include_singletons` and `--cutoffs`. NPLinker needs them to run the analysis properly.
 # Do NOT set these parameters: `--inputdir`, `--outputdir`, `--pfam_dir`. NPLinker will automatically configure them.
-# If parameter `--mibig` is set, make sure setting the config `mibig.to_use` to true and `mibig.version` to the version of mibig in bigscape.
+# If parameter `--mibig` is set, make sure to set the config `mibig.to_use` to true and `mibig.version` to the version of mibig in BiG-SCAPE.
 # The default value is "--mibig --clans-off --mix --include_singletons --cutoffs 0.30".
 # --------------
 # For version 2: