add parameter keep_mibig_only to GCFLoaderBase

NPLinker · Oct 25, 2023 · ba8e29a · ba8e29a
1 parent 61bf359
commit ba8e29a
Showing 1 changed file with 5 additions and 2 deletions.
diff --git a/src/nplinker/genomics/abc.py b/src/nplinker/genomics/abc.py
@@ -34,13 +34,16 @@ def get_bgcs(self) -> dict[str, BGC]:
         """
 
 
-
 class GCFLoaderBase(ABC):
 
     @abstractmethod
-    def get_gcfs(self) -> Sequence[GCF]:
+    def get_gcfs(self, keep_mibig_only) -> Sequence[GCF]:
         """Get GCF objects
 
+        Args:
+            keep_mibig_only(bool): True to keep GCFs that contain only MIBiG
+                BGCs.
+
         Returns:
             Sequence[GCF]: a list of :class:`~nplinker.genomic.GCF` objects
         """